Gene detail

Detail information of GWHGAAZE021631

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KCW70320.1	2.79652E-42	hypothetical protein EUGRSUZ_F035642, partial [Eucalyptus grandis]
Swissprot	tr\|P43293\|NAK_ARATH	2E-28	Probable serine/threonine-protein kinase NAK
trEMBL	tr\|A0A059BXE6\|A0A059BXE6_EUCGR	1E-42	Uncharacterized protein {ECO:0000313\|EMBL:KCW70320.1} (Fragment)
TAIR10	AT2G26290.1	6E-23	root-specific kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	58539524	58547971	+
GWHAAZE00000006	mRNA	58539524	58547971	+
GWHAAZE00000006	exon	58539524	58539858	+
GWHAAZE00000006	exon	58541809	58541932	+
GWHAAZE00000006	exon	58543391	58543567	+
GWHAAZE00000006	exon	58547550	58547971	+
GWHAAZE00000006	five_prime_UTR	58539524	58539834	+
GWHAAZE00000006	CDS	58539835	58539858	+
GWHAAZE00000006	CDS	58541809	58541932	+
GWHAAZE00000006	CDS	58543391	58543567	+
GWHAAZE00000006	CDS	58547550	58547971	+

Transcript Sequence
>GWHTAAZE021655 AAGTACATAGTGATGCAAAACCATCAAGTAACGCTAAAAGCAACAACAACAGTGGCCATAATAGCACATTGTCAAACAAAGATGGAGGCAATGTCCAGGATGTGCCTACAAGTGGGCAAATTGTGACTCCAAATTTGAAAATATTCACATTCGCTGAATTAAAAAGTGCAACTAAGAACTTCAGTGTGGATGTGTTGGGTGAGGGAGGTTTTGGAATTGTTTTCAAAGGTTGGGTCAATTAGAAGACATATTCCCTGTCCAAGGTTGGAGTTGGGAAAGCCGTCGCCATTAAGAGGTTAGGGCAAGAGAGCATGCAAGGACCTGCTGAAGGGCTGGATTTTAATGCAAAGCTTTCGGGTTTTGGATATGCAAAGAGATATCCTGAAAATGGGGAGTCCCACGTTTCAACAAGAGTTGTCGGTACCTACGGTTATGCAGCTCCAGAGTACATAGCTACTGATTTTGGGAATTGGGGATTAATCGGAGACTACTTGGAGGCAGGAGATGAAGTGTGGGTTAAAAGGAAAATATTAAGCTTCTACATAAAGTTGCTGATGGGAGAAGAAAGCACGGTTTTATCAAGAACTCGAGTTATATTCTGGGGAAGTTATCAAAGATCCCTCTTGGATAGCCGGGGATATTTGTATCCGAAAAGCGATGTCTACGGTTTTGGAGTGGTGTTGCTCGAATTACTAACGGGTTTGAGGGTGCTTGATGGGAGTAGGACCGAAAAAAATAATTTGGTGAAATGGGCCATGCCTTTGCTGCCTCACAAAAAAATGCTAACGAGAGTAGTGGATCCAAGGCTGGAAAATGATTACCCTCCACAAGAAGCCTTTGAATTGGCTTCACTTATACTACAATGTCTTCAAACTTACCCCAAAGTCCGGCCTTCAATGAACGAAGTATTGCAGAGTTTAGAACAAATTAACTCCATCAAGAAGGGTAACTCCAAAGTGGAGGTGGCTCAGGCTAGGCATCCTACGGTTCAAAGAGAGGCGACACCCTACAAATTCTTGTGGTCATGGATTCGTGGTTTGGGAGGAAGCAACTCATAG

Network for GWHGAAZE021631

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	112	203	4.00E-06

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.976
	SRR3591706	second leaf	0.962
	SRR3591707	mature leaf	1.001
	SRR3591708	Shoot apex	1.495
	SRR3591709	Stem	1.542
	SRR3591710	White floral bud	0.693
	SRR3591711	White flower	1.231
	SRR3591712	Green floral bud	1.681
	SRR3591713	Yellow flower	0.655
SRP173429	SRR8316895	Juvenile bud stage	1.375
	SRR8316896	Juvenile bud stage	1.750
	SRR8316897	Juvenile bud stage	0.344
	SRR8316894	Third green stage	1.503
	SRR8316900	Third green stage	2.656
	SRR8316901	Third green stage	2.656
	SRR8316898	Complete white stage	0.737
	SRR8316899	Complete white stage	3.123
	SRR8316903	Complete white stage	1.228
	SRR8316902	Silver flowering stage	0.966
	SRR8316904	Silver flowering stage	0.935
	SRR8316905	Silver flowering stage	0.684
	SRR8316906	Gold flowering stage	1.392
	SRR8316907	Gold flowering stage	1.653
	SRR8316908	Gold flowering stage	0.801
SRP132670	SRR6706286	Control	3.144
	SRR6706287	Light intensity 50%	2.927
	SRR6706288	Light intensity 20%	2.989
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.677
	CNS0095593	Slightly white alabastrum(diploid) 2	2.490
	CNS0095594	Slightly white alabastrum(diploid) 3	1.486
	CNS0095595	Whole white alabastrum(diploid) 2	1.832
	CNS0095596	Whole white alabastrum(diploid) 3	2.267
	CNS0095597	Whole white alabastrum(diploid) 4	1.286
	CNS0095598	Silvery flower (diploied) 1	3.356
	CNS0095599	Silvery flower (diploied) 2	2.057
	CNS0095600	Silvery flower (diploied) 3	1.477
	CNS0095601	Golden flower (diploid) 1	2.996
	CNS0095602	Golden flower (diploid) 2	1.668
	CNS0095603	Golden flower (diploid) 3	1.801
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.902
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.643
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.561
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.075
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.378
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.654
	CNS0095610	Silvery flower (tetraploid) 1	2.010
	CNS0095611	Silvery flower (tetraploid) 2	1.972
	CNS0095612	Silvery flower (tetraploid) 3	2.610
	CNS0095613	Golden flower (tetraploid) 1	1.006
	CNS0095614	Golden flower (tetraploid) 2	2.342
	CNS0095615	Golden flower (tetraploid) 3	1.165
CRA001975	CRR073297	Stem 1	2.777
	CRR073298	Stem 2	2.592
	CRR073299	Stem 3	0.712
	CRR073300	Leaf 1	3.074
	CRR073301	Leaf 2	2.712
	CRR073302	Leaf 3	1.287
	CRR073303	Juvenile bud 1	0.989
	CRR073304	Juvenile bud 2	0.376
	CRR073305	Juvenile bud 3	0.855
	CRR073306	Third green 1	0.375
	CRR073307	Third green 2	0.297
	CRR073308	Third green 3	0.131
	CRR073309	Second white 1	0.453
	CRR073310	Second white 2	0.182
	CRR073311	Second white 3	0.323
	CRR073312	Silver flowering 1	0.161
	CRR073313	Silver flowering 2	0.196
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.227
	CRR073316	Gold flowering 2	1.480
	CRR073317	Gold flowering 3	0.040
	CRR073318	Tawny withering 1	1.365
	CRR073319	Tawny withering 2	0.899
	CRR073320	Tawny withering 3	3.498