Detail information of GWHGAAZE021626


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABY40731.18.8477E-82FERONIA receptor-like kinase [Citrus trifoliata]
COGYP_001958461.11E-14hypothetical protein Aasi_1443
Swissprottr|Q9FID8|Y5900_ARATH4E-81Putative receptor-like protein kinase At5g39000 (Precursor)
trEMBLtr|A0A068U2D1|A0A068U2D1_COFCA3E-84Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02334.1}
TAIR10AT5G39000.11E-70Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5844026258450638+
GWHAAZE00000006mRNA5844026258450638+
GWHAAZE00000006exon5844026258440954+
GWHAAZE00000006exon5844105858441403+
GWHAAZE00000006exon5844384658443982+
GWHAAZE00000006exon5844405858444142+
GWHAAZE00000006exon5845021458450638+
GWHAAZE00000006CDS5844026258440954+
GWHAAZE00000006CDS5844105858441403+
GWHAAZE00000006CDS5844384658443982+
GWHAAZE00000006CDS5844405858444142+
GWHAAZE00000006CDS5845021458450638+
Transcript Sequence

Network for GWHGAAZE021626

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0040GO:0008097 5S rRNA binding GOslim:molecular_function
map03040 Spliceosome
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07714.18PK_Tyr_Ser-Thr302183.70E-28
PF00069.26Pkinase3595159.80E-17
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_CrRLK1L-1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.143
SRR3591706second leaf0.130
SRR3591707mature leaf0.025
SRR3591708Shoot apex0.190
SRR3591709Stem0.171
SRR3591710White floral bud0.147
SRR3591711White flower0.118
SRR3591712Green floral bud0.138
SRR3591713Yellow flower0.039
SRP173429 SRR8316895Juvenile bud stage 2.027
SRR8316896Juvenile bud stage 2.193
SRR8316897Juvenile bud stage 0.369
SRR8316894Third green stage 1.099
SRR8316900Third green stage 2.668
SRR8316901Third green stage 2.804
SRR8316898Complete white stage 1.209
SRR8316899Complete white stage 3.323
SRR8316903Complete white stage 2.081
SRR8316902Silver flowering stage1.232
SRR8316904Silver flowering stage2.030
SRR8316905Silver flowering stage0.571
SRR8316906Gold flowering stage 2.296
SRR8316907Gold flowering stage 1.979
SRR8316908Gold flowering stage 1.334
SRP132670SRR6706286Control2.327
SRR6706287Light intensity 50%2.258
SRR6706288Light intensity 20%2.528
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.476
CNS0095593Slightly white alabastrum(diploid) 22.020
CNS0095594Slightly white alabastrum(diploid) 31.099
CNS0095595Whole white alabastrum(diploid) 20.907
CNS0095596Whole white alabastrum(diploid) 31.119
CNS0095597Whole white alabastrum(diploid) 41.319
CNS0095598Silvery flower (diploied) 11.390
CNS0095599Silvery flower (diploied) 21.974
CNS0095600Silvery flower (diploied) 32.502
CNS0095601Golden flower (diploid) 12.961
CNS0095602Golden flower (diploid) 22.652
CNS0095603Golden flower (diploid) 32.183
CNS0095604Slightly white alabastrum(tetraploid) 10.019
CNS0095605Slightly white alabastrum(tetraploid) 20.059
CNS0095606Slightly white alabastrum(tetraploid) 30.030
CNS0095607Whole white alabastrum(tetraploid) 10.023
CNS0095608Whole white alabastrum(tetraploid) 20.117
CNS0095609Whole white alabastrum(tetraploid) 30.034
CNS0095610Silvery flower (tetraploid) 10.092
CNS0095611Silvery flower (tetraploid) 20.065
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.016
CNS0095615Golden flower (tetraploid) 30.002
CRA001975CRR073297Stem 11.879
CRR073298Stem 22.308
CRR073299Stem 30.663
CRR073300Leaf 12.537
CRR073301Leaf 21.660
CRR073302Leaf 30.818
CRR073303Juvenile bud 11.208
CRR073304Juvenile bud 20.646
CRR073305Juvenile bud 31.292
CRR073306Third green 10.648
CRR073307Third green 20.102
CRR073308Third green 30.253
CRR073309Second white 10.478
CRR073310Second white 21.281
CRR073311Second white 31.068
CRR073312Silver flowering 10.530
CRR073313Silver flowering 20.714
CRR073314Silver flowering 30.188
CRR073315Gold flowering 10.500
CRR073316Gold flowering 21.255
CRR073317Gold flowering 30.306
CRR073318Tawny withering 11.929
CRR073319Tawny withering 21.680
CRR073320Tawny withering 31.102