Gene detail

Detail information of GWHGAAZE021624

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354974.1	0	PREDICTED: receptor-like protein kinase FERONIA-like [Solanum tuberosum]
COG	YP_003270695.1	2E-20	serine/threonine protein kinase
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	2E-99	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|M1APN7\|M1APN7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027429}
TAIR10	AT3G51550.1	3E-90	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	58373179	58380162	-
GWHAAZE00000006	mRNA	58373179	58380162	-
GWHAAZE00000006	exon	58379070	58380162	-
GWHAAZE00000006	exon	58377824	58378155	-
GWHAAZE00000006	exon	58377033	58377113	-
GWHAAZE00000006	exon	58376144	58376282	-
GWHAAZE00000006	exon	58375910	58376043	-
GWHAAZE00000006	exon	58375717	58375831	-
GWHAAZE00000006	exon	58373179	58373522	-
GWHAAZE00000006	CDS	58379070	58380162	-
GWHAAZE00000006	CDS	58377824	58378155	-
GWHAAZE00000006	CDS	58377033	58377113	-
GWHAAZE00000006	CDS	58376144	58376282	-
GWHAAZE00000006	CDS	58375910	58376043	-
GWHAAZE00000006	CDS	58375717	58375831	-
GWHAAZE00000006	CDS	58373179	58373522	-

Transcript Sequence
>GWHTAAZE021648 ATGTTCAGTCCCCCTTCTGAGAACTTATGCTTATGCCGTCAATTTTCACTCGATGAGATACTGTCGGCAACCAACAATTTTGACGATTCACTGGTTATTGGGAAGGGGGGGTTCGGTAATGTTTACAAAGGGATGATTGATAATGGAGCTTGTACTGTTGCTATTAAGCGTTTGAATCCCTTGTCCAAGCAAGGTGCCCCTGAGTTTTGGACTGAGATTACCATGCTTTCAAATTTTCGACATAGCCACCTCGTTTCTTTGATCGGGTATTGTGATCATTATAACGAGATGATCCTTGTCTATGACTATATGGTCCGTGGAACCCTAGCAGACCATTTGTACAAAATTAATAAAAATAACAGTGATTATAATAATATTGGTAACAGTTTACCTTTGTCTTGGGTGCAACGTCTCAACATATGTATAGGGGCTGCTCGTGGATTGGACTACCTCCATACTGGTACTGCCATCCTCCAAAGAATCATACATCGAGACGTGAAAAGCTCAAACATTCTGTTGGATGAAAATTGGGCAGCTAAGATTTCGGATTTTGGATTGTCCAGAATTGGCCCTGCAGATCAGGAGGTCACCCAGGTTAGCACTATGCACATCAAAGGCACACCTGGTTATGTGGATCCCAATTATTTCTTGACTCGCAAAATAACGAGGAAATCGGATGTGTATGCATTTGGGGTGGTGTTGTTGGAAGTACTCTGCGAGAGGCGGGCTCTGGATCGAAGCCTTGATGAGGACCAATGGAGTCTTGCTGGATGGGGCCAGCAGTGCATCAAAGAAGGAGCATCAACTCAGATTATTGGGCCGAATTTAAGGGGGGAAATCACGCCAAATTCTTTGATGGAATTTGTGCAAATTGTGGATCAATGCTTGCATTATCGGCCAAAGAAACGACCTACAATGTCGGGGGTGGTGGCCAGACTGGAGCTTGCATTGGCGATGCAGCTGCATACCAATTTTGTCGCCGACAAGCATTTGTTTGATACTTGCTTGCCTGTTAACAACCAAGAAAATGGGGATACTTATCTGGAGGACAACCATATTAATAAAGTTGTACAGCTACACGATTCAAGCAGTGTACATAGTGATGCAAAACCATCAAGTAACGCTAAAAGTAGCAACAACAATGGCCATAATAGCACATTGCCGAACAAAGATGGAGGTGTCGTCCAGGATGAACCTACAAGTGGGCAAATTGAGAATCCAAATTTGAAAATTTTCACATTTGATGAATTAAAAAGCGCAACTAAGAACTTCACACTGGATGTGTTGGGCAAAGGAGGTTTTGGAATTGTTTATAAAGGTTGGGTCAATGAGCAGACATATTCCCCATCAAAGGTTGGTGTTGGGAAAGCCATTGCCGTTAAGAGGTTAGGGCGAGAGAGCATGCAAGGACTTGCTGAAGGGCTGGTCAGGCAGATCGGCCAAGCCATGTGGCATTCTATAAAAAGGAAGCGCCGATGGTACCAATCAGTTGCATTTAATGGAATGATGGAGGTGGAAATTTTGGGAAAATTTAGTCATCCTGATATTGTGAAGCTCTTGGGGTACTACTGTGGGGAAGACAAGGAATTCGTCCTAGTATATGAATACATGCAGAATGGAAGCTTAGATCACCACCTTTTTGGCAGTGCAACATCACTTCCATGGGACACACGGATTAAAATAGCAATAGGAGCAGCTCGAGGCCTTTCTTTCCTGCATGCAACAAAGAATCAAGTCATAGTCCGCGATGTTAAGGCCTCGACTATATTGCTGGATGGGGATTTTAATGCAAAACTTTCGGGTTTTGGATTTGCAAAGAGAGATTCTGAAAATGGGGAGTCAACAGGAATTATTGGTACCTATGGTTATGCAGCTCCGGAGTACATAGACACTGGGCATTTGTATCTGAAGAGCGATGTCTACGGTTTTGGAGTGGTGTTGCTCGAAATACTAACAGGGCTAAGGGTGCATGATGTGCGTAGGACCGAAAAGATTGATTTGGTGGAATGGGCCAAGCCTTTGCTGCATCGTAAAATGGAGCTGAAGAGAGAAGTAGTGGATCCAAATCTGGAAAATGATTACCCCCTACAAAGAGCCTTTGAATTGGCTTCCCTGATAATAAAATGTCTTCAAAGTGACCACAAACTCCGGCCTTCAATGAAAAGAGTATTGCAGAGTTTAGAACGTATTAACTCCAAAGGGTGGAGACGGCTCAGGCCAGGCATCCTACAGTTCTAA

Network for GWHGAAZE021624

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	32	313	8.10E-44
PF00069.26	Pkinase	500	725	2.20E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.792
	SRR3591706	second leaf	11.446
	SRR3591707	mature leaf	18.685
	SRR3591708	Shoot apex	13.235
	SRR3591709	Stem	31.428
	SRR3591710	White floral bud	9.694
	SRR3591711	White flower	15.868
	SRR3591712	Green floral bud	7.305
	SRR3591713	Yellow flower	11.445
SRP173429	SRR8316895	Juvenile bud stage	14.826
	SRR8316896	Juvenile bud stage	30.084
	SRR8316897	Juvenile bud stage	22.547
	SRR8316894	Third green stage	4.815
	SRR8316900	Third green stage	7.455
	SRR8316901	Third green stage	11.268
	SRR8316898	Complete white stage	3.187
	SRR8316899	Complete white stage	19.950
	SRR8316903	Complete white stage	5.564
	SRR8316902	Silver flowering stage	7.133
	SRR8316904	Silver flowering stage	6.392
	SRR8316905	Silver flowering stage	3.464
	SRR8316906	Gold flowering stage	13.722
	SRR8316907	Gold flowering stage	13.549
	SRR8316908	Gold flowering stage	13.088
SRP132670	SRR6706286	Control	15.251
	SRR6706287	Light intensity 50%	14.513
	SRR6706288	Light intensity 20%	14.315
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.907
	CNS0095593	Slightly white alabastrum(diploid) 2	36.095
	CNS0095594	Slightly white alabastrum(diploid) 3	28.874
	CNS0095595	Whole white alabastrum(diploid) 2	20.969
	CNS0095596	Whole white alabastrum(diploid) 3	4.657
	CNS0095597	Whole white alabastrum(diploid) 4	8.446
	CNS0095598	Silvery flower (diploied) 1	19.212
	CNS0095599	Silvery flower (diploied) 2	16.661
	CNS0095600	Silvery flower (diploied) 3	11.870
	CNS0095601	Golden flower (diploid) 1	31.081
	CNS0095602	Golden flower (diploid) 2	27.508
	CNS0095603	Golden flower (diploid) 3	25.244
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.653
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.384
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.711
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.046
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.280
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.444
	CNS0095610	Silvery flower (tetraploid) 1	7.899
	CNS0095611	Silvery flower (tetraploid) 2	6.315
	CNS0095612	Silvery flower (tetraploid) 3	4.775
	CNS0095613	Golden flower (tetraploid) 1	4.759
	CNS0095614	Golden flower (tetraploid) 2	6.175
	CNS0095615	Golden flower (tetraploid) 3	3.540
CRA001975	CRR073297	Stem 1	24.533
	CRR073298	Stem 2	16.709
	CRR073299	Stem 3	10.818
	CRR073300	Leaf 1	18.070
	CRR073301	Leaf 2	16.909
	CRR073302	Leaf 3	14.483
	CRR073303	Juvenile bud 1	9.034
	CRR073304	Juvenile bud 2	4.295
	CRR073305	Juvenile bud 3	8.587
	CRR073306	Third green 1	7.245
	CRR073307	Third green 2	4.719
	CRR073308	Third green 3	6.270
	CRR073309	Second white 1	4.028
	CRR073310	Second white 2	4.366
	CRR073311	Second white 3	4.052
	CRR073312	Silver flowering 1	6.965
	CRR073313	Silver flowering 2	7.397
	CRR073314	Silver flowering 3	5.014
	CRR073315	Gold flowering 1	9.649
	CRR073316	Gold flowering 2	20.638
	CRR073317	Gold flowering 3	7.164
	CRR073318	Tawny withering 1	36.590
	CRR073319	Tawny withering 2	65.657
	CRR073320	Tawny withering 3	31.552