Gene detail

Detail information of GWHGAAZE021622

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009622684.1	8.161E-133	PREDICTED: probable serine/threonine-protein kinase NAK isoform X3 [Nicotiana tomentosiformis]
COG	YP_001958461.1	7E-16	hypothetical protein Aasi_1443
Swissprot	tr\|P46573\|APK1B_ARATH	2E-109	Protein kinase APK1B, chloroplastic (Precursor)
trEMBL	tr\|M1AM81\|M1AM81_SOLTU	3E-128	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400025863}
TAIR10	AT1G76360.1	1E-95	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	58259818	58269868	+
GWHAAZE00000006	mRNA	58259818	58269868	+
GWHAAZE00000006	exon	58259818	58260031	+
GWHAAZE00000006	exon	58260869	58261263	+
GWHAAZE00000006	exon	58261782	58261811	+
GWHAAZE00000006	exon	58262758	58262896	+
GWHAAZE00000006	exon	58263007	58263143	+
GWHAAZE00000006	exon	58263219	58263336	+
GWHAAZE00000006	exon	58269492	58269868	+
GWHAAZE00000006	CDS	58259818	58260031	+
GWHAAZE00000006	CDS	58260869	58261263	+
GWHAAZE00000006	CDS	58261782	58261811	+
GWHAAZE00000006	CDS	58262758	58262896	+
GWHAAZE00000006	CDS	58263007	58263143	+
GWHAAZE00000006	CDS	58263219	58263336	+
GWHAAZE00000006	CDS	58269492	58269868	+

Transcript Sequence
>GWHTAAZE021646 ATGTCTGAGGTGGTGGCCAGACTTGAGCTTGCATTGGCATTGCAACTATGCACCAATCTTGTGATTGAGGAGTATTTGTTTGATACTTGCTTGCCTATTAACGACCAAGAAAATGTGGATTCTTATCTGAAGGACGACCATATTGATAAAGTTGTACAGCTAGGGGATTCAAGCATCGGACAGTTTTTCCAACTTGGAGCTCCAGTGGTCTCGGGTTATAAATTTCTATGTTTTGATTATTTCACTAACGCATGGGTTTTTATTCTCTTTTTTAAGTACATAGTGATGCAAAACCATCAAGTAATGCTAAAAGCAACAACAACAGTGGCCATAATAGCACATTGTCGAACAAAGATGAAGGGCAATGTCCAGGTTGTGCCTACAAGTGGGCAGATTGTCACTCCAAATTTGAAAATATTCACATTTGCTGAATTGAAAAGTGCAACTAAGAACTTCAGTGTGGATGTGTTGGGTGAGGGAGGTTTTGGAATTGTTTTCAAAGGTTGGGTCAATCAAAAGACATATTCCCCGTCAAAGGTTGGAGTTTGGAAAGCCGTCGCCATTAAGAGGTTAGGGCAAGAGAGCATCCAAGGACCTGCTGAAGGGCTGGGTATTGATGAGAGAGGTTTAACCCGCTTGATGGAAGTTGAAATTTTGGGAAAATTTAGTCATCCTAATATTGTGAAGCTCTTGGGGTATTGCTGTGAGAAAGACAGGGAATTTCTCCTTGTTTATGAATACATGCTGAATGGAAGTTTAGATTGCCACCTTTTCAGAAAAAGTGCAAAATCACTTCAATGGGACACACGGCTTAAAATAGCAGTAGGAACAGCTCGAGGCCTTTCTTTCTTGCATGCAATAGAGAATCAAGTCATAGTCCGTGACATAAAGAGCAAAAATATATTGCTGGATGGGGATTTTAATGGAAAGCTTTCGGGTTTTGGATGTGCAAAGAGATATCCTGAAAATGGGGAGTCCCACGTTTCAACAAGAGTTATGGGTGGTTATCCAGCTCCAGAGTACATAACTACTGGATATTTGTATCCAAAAAGCGATGTCTACAGTTTTGGAGTGGTGTTGCTCGAAATATTAACAGGTTTGAGGGTGATCGATGCGAATAGGACCAAAAAGATTAAATCGGTGGAATGGGCCATGCCTTTGCTGCCTCACAAAAAAATGCTGACGAGAGTAGTGGATCCAAGGCTGGAAAATGATTACCCTCCACAAGAAGCCTTTGAATTGGCTTCACTTACGCTACAATGTCTTCAACCTTACCCCAAACTCCGGCCTTCAATGAACGAAGTATTGCAGAGTTTAGAACAAATTAACTCCATCAAGAAGGGTAACTCCAAAGTGGAGGCAGCTCAGGCTAGGCATCCTACGGTTCAAAGAGAGGTGACAACCTACTAA

Network for GWHGAAZE021622

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	156	439	1.70E-38

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.681
	SRR3591706	second leaf	1.167
	SRR3591707	mature leaf	1.420
	SRR3591708	Shoot apex	2.204
	SRR3591709	Stem	2.769
	SRR3591710	White floral bud	1.099
	SRR3591711	White flower	1.193
	SRR3591712	Green floral bud	1.191
	SRR3591713	Yellow flower	0.820
SRP173429	SRR8316895	Juvenile bud stage	3.686
	SRR8316896	Juvenile bud stage	5.009
	SRR8316897	Juvenile bud stage	1.141
	SRR8316894	Third green stage	2.168
	SRR8316900	Third green stage	3.454
	SRR8316901	Third green stage	4.405
	SRR8316898	Complete white stage	1.392
	SRR8316899	Complete white stage	4.800
	SRR8316903	Complete white stage	3.101
	SRR8316902	Silver flowering stage	1.645
	SRR8316904	Silver flowering stage	2.527
	SRR8316905	Silver flowering stage	1.287
	SRR8316906	Gold flowering stage	3.379
	SRR8316907	Gold flowering stage	3.101
	SRR8316908	Gold flowering stage	1.094
SRP132670	SRR6706286	Control	3.106
	SRR6706287	Light intensity 50%	4.586
	SRR6706288	Light intensity 20%	4.322
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.332
	CNS0095593	Slightly white alabastrum(diploid) 2	1.426
	CNS0095594	Slightly white alabastrum(diploid) 3	2.271
	CNS0095595	Whole white alabastrum(diploid) 2	2.482
	CNS0095596	Whole white alabastrum(diploid) 3	1.764
	CNS0095597	Whole white alabastrum(diploid) 4	1.397
	CNS0095598	Silvery flower (diploied) 1	4.355
	CNS0095599	Silvery flower (diploied) 2	2.994
	CNS0095600	Silvery flower (diploied) 3	2.992
	CNS0095601	Golden flower (diploid) 1	4.430
	CNS0095602	Golden flower (diploid) 2	4.094
	CNS0095603	Golden flower (diploid) 3	4.249
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.378
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.587
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.163
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.650
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.469
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.945
	CNS0095610	Silvery flower (tetraploid) 1	1.591
	CNS0095611	Silvery flower (tetraploid) 2	1.602
	CNS0095612	Silvery flower (tetraploid) 3	1.559
	CNS0095613	Golden flower (tetraploid) 1	0.970
	CNS0095614	Golden flower (tetraploid) 2	0.841
	CNS0095615	Golden flower (tetraploid) 3	1.493
CRA001975	CRR073297	Stem 1	4.415
	CRR073298	Stem 2	3.108
	CRR073299	Stem 3	1.770
	CRR073300	Leaf 1	4.264
	CRR073301	Leaf 2	3.397
	CRR073302	Leaf 3	1.522
	CRR073303	Juvenile bud 1	2.570
	CRR073304	Juvenile bud 2	0.600
	CRR073305	Juvenile bud 3	1.629
	CRR073306	Third green 1	0.574
	CRR073307	Third green 2	0.135
	CRR073308	Third green 3	0.231
	CRR073309	Second white 1	0.032
	CRR073310	Second white 2	0.614
	CRR073311	Second white 3	0.256
	CRR073312	Silver flowering 1	0.319
	CRR073313	Silver flowering 2	0.068
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.279
	CRR073316	Gold flowering 2	1.941
	CRR073317	Gold flowering 3	0.165
	CRR073318	Tawny withering 1	2.645
	CRR073319	Tawny withering 2	1.579
	CRR073320	Tawny withering 3	2.430