Gene detail

Detail information of GWHGAAZE021604

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354974.1	5.7773E-124	PREDICTED: receptor-like protein kinase FERONIA-like [Solanum tuberosum]
COG	YP_001958461.1	1E-21	hypothetical protein Aasi_1443
Swissprot	tr\|Q9FID8\|Y5900_ARATH	1E-105	Putative receptor-like protein kinase At5g39000 (Precursor)
trEMBL	tr\|M1APN7\|M1APN7_SOLTU	2E-124	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027429}
TAIR10	AT5G39000.1	2E-92	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	57772414	57774707	+
GWHAAZE00000006	mRNA	57772414	57774707	+
GWHAAZE00000006	exon	57772414	57773536	+
GWHAAZE00000006	exon	57774424	57774707	+
GWHAAZE00000006	CDS	57772414	57773536	+
GWHAAZE00000006	CDS	57774424	57774707	+

Transcript Sequence
>GWHTAAZE021628 AGAATGTTCAGTCCCCCATCGGAGCAGTTATGCCGTCGCTTTTCACTCGATGAGATTAAATTGGCAACCAACAATTTCGACGATTCCATGGTTATAGGTAAGGGTGGATTCGGTACGGTTTACAAAGGGGATATCATTGATAATAATGGCGCATATACTACTGTTGCTTTCAAGCGTTTGAATCCCTTGTCCAAGCAAGGTGCTCCTGAGTTTTGGACCGAGATTACTATGCTATCAAATTTTCGGCATAGCCACCTCGTTTCTTTGATCGGCTATTGCGATCATGATAACGAGATGATTCTTGTTTACGAGTATATGGTCCGTGGAACCCTAGCGGACCATTTGTACAAAATTAGTAAAAATAACAATATTGGTAATAGTTTACCTTTATCCTGGGTACAAAGACTCAAAATATGTATAGGGGCTGCTCGCGGATTGGACTACCTCCATACTGGTACTGCCATCTTGGAGAGAGTCATACATCGAGATGTGAAAAGCTCAAACATTTTGTTGGATGAGAATTGGGCAGCTAAGATTTCGGATTTTGGATTGTCTAGAATTGGCCCTGCAGAACAGGAGGTAACCCATGTTAGCACTGTGCACATCAAAGGCACATTCGGTTATATGGATCCAGATTATTTCGTGACTCACAAATTCACGAGGAAATCGGATGTGTACGCATTTGGGGTGGTATTGTTGGAAGTACTCTGCGAGAGGCCGGCTCTGGATCGAAGCCTTGATGAGGACCAATGGGGTCTTGCTAGATGGGGCCAGCAGTGCATCAAAGAAGGAGCTTCACATCAGATTATTGGGCCGAATTTGAAGTGGGAAATCTTGCCAAATTCTCTCACAGAATTTGTGCAAATTGCGGATCAATGCTTGCATAGTTGTCCAAAGAAACGTCCTACAATGTCTGAGGTGGTGACCAGACTTGAGCTTGCGTTGGCATCGCAACTACGCACCGATCTTGTGATTGAGGAGTATTTTTTTGATACTTGCTTGCCTGTTAGCGACCAAGAAAATGCGGATTCTTATCCGGAGGGCGACCATTTTGATAAAGTTGTACAGCTAGGGGATTCAAGCGGCGGACAGTTTTTCCAACTCGGAGCTCCGGTGATCTCAGTACATAGTGATGCAAAACCATCAAGTAACGCTAAAAGCAACAACAACAGCGGCCATAATAGCACATTGCCGAACAAAGACGAAGGCGTTGTCCAGGATGTGCCTACAAGTGGGCAAATTTTGAATCCAAATATGAAAATTTTCACATTCAATGAATTAAGAAGTGCAACTAGGAACTTCAAACTGGATGTGTTGGGCGAGGGAGGTTTTGGAATTGTTTTCAAAGGTTGGGTCGATGAGAAGACATATTTCACGGGTTGGAGTTGGGAAAGCTGTTGCCATTAA

Network for GWHGAAZE021604

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	31	311	2.90E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.134
	SRR3591706	second leaf	0.037
	SRR3591707	mature leaf	0.099
	SRR3591708	Shoot apex	0.081
	SRR3591709	Stem	0.165
	SRR3591710	White floral bud	2.861
	SRR3591711	White flower	2.744
	SRR3591712	Green floral bud	2.007
	SRR3591713	Yellow flower	2.983
SRP173429	SRR8316895	Juvenile bud stage	0.976
	SRR8316896	Juvenile bud stage	1.466
	SRR8316897	Juvenile bud stage	1.564
	SRR8316894	Third green stage	0.662
	SRR8316900	Third green stage	1.292
	SRR8316901	Third green stage	1.450
	SRR8316898	Complete white stage	0.343
	SRR8316899	Complete white stage	1.827
	SRR8316903	Complete white stage	1.277
	SRR8316902	Silver flowering stage	0.609
	SRR8316904	Silver flowering stage	1.003
	SRR8316905	Silver flowering stage	0.386
	SRR8316906	Gold flowering stage	1.722
	SRR8316907	Gold flowering stage	1.022
	SRR8316908	Gold flowering stage	1.184
SRP132670	SRR6706286	Control	2.445
	SRR6706287	Light intensity 50%	2.288
	SRR6706288	Light intensity 20%	2.321
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.633
	CNS0095593	Slightly white alabastrum(diploid) 2	0.340
	CNS0095594	Slightly white alabastrum(diploid) 3	0.965
	CNS0095595	Whole white alabastrum(diploid) 2	1.037
	CNS0095596	Whole white alabastrum(diploid) 3	0.484
	CNS0095597	Whole white alabastrum(diploid) 4	0.172
	CNS0095598	Silvery flower (diploied) 1	0.717
	CNS0095599	Silvery flower (diploied) 2	0.379
	CNS0095600	Silvery flower (diploied) 3	1.408
	CNS0095601	Golden flower (diploid) 1	0.496
	CNS0095602	Golden flower (diploid) 2	1.135
	CNS0095603	Golden flower (diploid) 3	1.224
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.012
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.024
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.023
	CNS0095615	Golden flower (tetraploid) 3	0.018
CRA001975	CRR073297	Stem 1	1.288
	CRR073298	Stem 2	1.902
	CRR073299	Stem 3	0.961
	CRR073300	Leaf 1	1.456
	CRR073301	Leaf 2	1.557
	CRR073302	Leaf 3	1.506
	CRR073303	Juvenile bud 1	0.688
	CRR073304	Juvenile bud 2	0.549
	CRR073305	Juvenile bud 3	0.982
	CRR073306	Third green 1	0.290
	CRR073307	Third green 2	0.287
	CRR073308	Third green 3	0.752
	CRR073309	Second white 1	0.152
	CRR073310	Second white 2	0.395
	CRR073311	Second white 3	1.045
	CRR073312	Silver flowering 1	0.167
	CRR073313	Silver flowering 2	0.384
	CRR073314	Silver flowering 3	0.249
	CRR073315	Gold flowering 1	0.580
	CRR073316	Gold flowering 2	0.643
	CRR073317	Gold flowering 3	0.060
	CRR073318	Tawny withering 1	0.703
	CRR073319	Tawny withering 2	0.561
	CRR073320	Tawny withering 3	0.663