Gene detail

Detail information of GWHGAAZE021599

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009396689.1	4.0744E-108	PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Musa acuminata subsp. malaccensis]
COG	YP_007201433.1	5E-15	protein kinase family protein
Swissprot	tr\|P46573\|APK1B_ARATH	3E-98	Protein kinase APK1B, chloroplastic (Precursor)
trEMBL	tr\|K3Y7G0\|K3Y7G0_SETIT	2E-104	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si010151m}
TAIR10	AT1G76360.1	7E-84	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	57694187	57704281	+
GWHAAZE00000006	mRNA	57694187	57704281	+
GWHAAZE00000006	exon	57694187	57694382	+
GWHAAZE00000006	exon	57694626	57695327	+
GWHAAZE00000006	exon	57696130	57696461	+
GWHAAZE00000006	exon	57698288	57698465	+
GWHAAZE00000006	exon	57698563	57698699	+
GWHAAZE00000006	exon	57698778	57698901	+
GWHAAZE00000006	exon	57703008	57703110	+
GWHAAZE00000006	exon	57703831	57704281	+
GWHAAZE00000006	CDS	57694187	57694382	+
GWHAAZE00000006	CDS	57694626	57695327	+
GWHAAZE00000006	CDS	57696130	57696461	+
GWHAAZE00000006	CDS	57698288	57698465	+
GWHAAZE00000006	CDS	57698563	57698699	+
GWHAAZE00000006	CDS	57698778	57698901	+
GWHAAZE00000006	CDS	57703008	57703110	+
GWHAAZE00000006	CDS	57703831	57704281	+

Transcript Sequence
>GWHTAAZE021623 ATGTTCAGTCCCCCGTCGGAGGACTTATGCCGTCGGTTTTCACTCCTTGAGATTCTAGCGGCCACCAACAATTTCGACAATTCCATGGTTATAGGTAAGGGAGGATTCGGTACGGTTTACAAAGGGGATATCATTGATAATGATGGCGCATATACTACTGTTGCTTTCAAGCGTTTGAATCCCTTGTCCAAGCAAGGGGCTGCTCGCGGATTGGACTACCTCCATACTGGTACTGCCATCTTGCAGAGAGTCATACATCGAGATGTGAAAAGCTCAAACATATTGTTGGATGAGAATTGGGAAGCTAAGATTTCGGATTTTGGATTGTCCAGAATTGGCCCTGCTGAGCAGGAGGTCACCCATGTTAGCACTGCTCACATTGCAGGCACATTCGGTTATATGGATCCAGATTATTTCTTGACTCGCAGATTCACGAGGAAATCAGATGTGTACGCGTTTGGGGTGGTATTGTTGGAAGTACTCTGTGAGAGGCCAGCTCTGGATCGCAGCCTTGATGAGGACCAATGGGGTCTTGCTAGATGGGGCCAGCAGTGCATCAAAGAAGGAAAATCACATCAGATTATTGGGCCGAATTTGAAGTGGGAAATCTTGGCAAATTCTCTCACGGAATTTGTGCAAATTGCGGATCAATGCTTGCATAGTCGTCCAAAGCAACGTCCTACAATGTCTGAGGTGGTGGCCAGACTTGAGCTTGCATTGGCATTGCAACTACGCACTGATCTTGTGATCGAGGAGTATTTTTTTGATACTAGCTTGCCTGCTAACGACCAAGAAAATGCGGATTCTCATCCGGAGGACGACCATTTTGATGAAGTTGTACAGCTAGGGGATTCAAGCAGCGGACAGTTTTTCCAACTCGGAGCTCCGGTGGTCTCGGTACATAATGATGCAAAACCATCGAGTAATGCTAAAAGCAACAACAACAGCGGCCATAATAGCACATTGTTGAACAAAGATGGAGGCAGCGCCCAGGATGTGCCTACAGGTGGGCAAATTGTGACTCCAAATTTGAAAACATTCACATTCGCTGAATTAAAAAGGGCAACTAAGAACTTCACACTGGATGTGTTGGGCATGGGAGGTTTTGGAATTGTTTTCAAAGGTTGGGTTAATGAGAAGACATATTCCCCGTCAAAGGTTGGTATTGGGAAAGCGGTTGCCATTAAGAGGTTAAGGCGAGAGAGCATGCAAGGACTTGCTGAAGGGCTGATGGAAATCGAAATTTTGGGAAAATTTAGTCATCCTAATATTGTGAAGCTCTTAGGGTACTACCGTGGGGAAGACGAGGAATTCCTCCTTGTTTATGAATACATGCAGAATGGAAGCTTTGATCGACACCTTTTCAGAACAGAAGAAAGCCCAGTTTTAGAATGTGAATTGAGCACTCAAGGTGCAAAATCACTTCCATGGGACACACGGCTTAAAATAGCAGTAGGAGCAGCTCGAGGCCTTTCTTTCTTGCATGCAACAGAGAATCAAATCATAGTCCGAGATGTTCAGACCAAAAATATATTGCTGGATGGGGATTTTAATGCAAAACTTTCGGGTTTTGGATGTGCAAAGGGACATCCTGAAGATGGGGAGTCCCACGTTTCAACAAGAGTTATCGGTACCTTTGGTTATGCAGCTCCGGAGTACGTAGCCACTGATTGCGAGGAGTCCTTTATTGGGAGGAAGATTAGAGTTCTTGAAACTATGCATAGCACTGGCAGTAGATACTATGGGAAGATATTGCAGAGTGAAACCATTTGGATGTTTGTATCTGGCGATGTCTATGGTTTTGGGGTGGTGTTGCTCGAATTACTAACAGGTTTGAGGGTGCTCGATAGGAGAAGGACCGGAAAGATTAGTTTGGTGAAATGGGCCAAGCCTTTGCTGCCTCACAAAGAAATGCTTACGAGAGTAGTGGATCCAAGGCTGGAAAATGATTACCCTCCACAAGAAGCCTTCAAATTGGCTTCACTTATACTACAATGTCTTCAAAATGATCCCAAAGTCCGGCCTTCAATGAATGAAGTATTTCAGAGTTTAGAACAATTTAGATCCATCAAGAAGGGTAACTCCAAAGTGGAGGTGACTCAGGCTAGGCATCCTGCGGCTCAAAGAGAGATGACACCCGACAAGAATACAGTTCAAAGAGAGGTGACACCCTACAAATTCCTGTGGTCATGGACTCGTTGTTTGTGGGGAAGCAACTCATAG

Network for GWHGAAZE021599

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	68	234	7.90E-27
PF07714.18	PK_Tyr_Ser-Thr	362	556	1.90E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.116
	SRR3591706	second leaf	0.031
	SRR3591707	mature leaf	0.136
	SRR3591708	Shoot apex	0.207
	SRR3591709	Stem	0.243
	SRR3591710	White floral bud	0.049
	SRR3591711	White flower	0.075
	SRR3591712	Green floral bud	0.151
	SRR3591713	Yellow flower	0.208
SRP173429	SRR8316895	Juvenile bud stage	0.170
	SRR8316896	Juvenile bud stage	0.312
	SRR8316897	Juvenile bud stage	0.033
	SRR8316894	Third green stage	0.098
	SRR8316900	Third green stage	0.195
	SRR8316901	Third green stage	0.120
	SRR8316898	Complete white stage	0.030
	SRR8316899	Complete white stage	0.055
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.111
	SRR8316904	Silver flowering stage	0.050
	SRR8316905	Silver flowering stage	0.030
	SRR8316906	Gold flowering stage	0.054
	SRR8316907	Gold flowering stage	0.048
	SRR8316908	Gold flowering stage	0.020
SRP132670	SRR6706286	Control	0.057
	SRR6706287	Light intensity 50%	0.070
	SRR6706288	Light intensity 20%	0.116
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.010
	CNS0095593	Slightly white alabastrum(diploid) 2	0.062
	CNS0095594	Slightly white alabastrum(diploid) 3	0.122
	CNS0095595	Whole white alabastrum(diploid) 2	0.192
	CNS0095596	Whole white alabastrum(diploid) 3	0.058
	CNS0095597	Whole white alabastrum(diploid) 4	0.338
	CNS0095598	Silvery flower (diploied) 1	0.015
	CNS0095599	Silvery flower (diploied) 2	0.030
	CNS0095600	Silvery flower (diploied) 3	0.036
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.060
	CNS0095603	Golden flower (diploid) 3	0.136
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.075
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.030
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.094
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.386
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.255
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.081
	CNS0095610	Silvery flower (tetraploid) 1	0.011
	CNS0095611	Silvery flower (tetraploid) 2	0.006
	CNS0095612	Silvery flower (tetraploid) 3	0.022
	CNS0095613	Golden flower (tetraploid) 1	0.080
	CNS0095614	Golden flower (tetraploid) 2	0.104
	CNS0095615	Golden flower (tetraploid) 3	0.069
CRA001975	CRR073297	Stem 1	0.105
	CRR073298	Stem 2	0.223
	CRR073299	Stem 3	0.161
	CRR073300	Leaf 1	0.109
	CRR073301	Leaf 2	0.198
	CRR073302	Leaf 3	0.140
	CRR073303	Juvenile bud 1	0.048
	CRR073304	Juvenile bud 2	0.025
	CRR073305	Juvenile bud 3	0.021
	CRR073306	Third green 1	0.005
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.098
	CRR073309	Second white 1	0.103
	CRR073310	Second white 2	0.041
	CRR073311	Second white 3	0.113
	CRR073312	Silver flowering 1	0.013
	CRR073313	Silver flowering 2	0.008
	CRR073314	Silver flowering 3	0.060
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.097
	CRR073317	Gold flowering 3	0.031
	CRR073318	Tawny withering 1	0.508
	CRR073319	Tawny withering 2	1.155
	CRR073320	Tawny withering 3	1.196