Gene detail

Detail information of GWHGAAZE021583

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009792373.1	7.9738E-123	PREDICTED: probable serine/threonine-protein kinase NAK isoform X1 [Nicotiana sylvestris]
COG	YP_008147149.1	2E-14	protein kinase
Swissprot	tr\|P46573\|APK1B_ARATH	4E-96	Protein kinase APK1B, chloroplastic (Precursor)
trEMBL	tr\|B9R8N8\|B9R8N8_RICCO	6E-116	Serine/threonine-protein kinase cx32, putative {ECO:0000313\|EMBL:EEF52868.1}
TAIR10	AT1G76360.1	1E-82	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	57322606	57332708	-
GWHAAZE00000006	mRNA	57322606	57332708	-
GWHAAZE00000006	exon	57332394	57332708	-
GWHAAZE00000006	exon	57331568	57332114	-
GWHAAZE00000006	exon	57330432	57330763	-
GWHAAZE00000006	exon	57329344	57329402	-
GWHAAZE00000006	exon	57329219	57329255	-
GWHAAZE00000006	exon	57328414	57328591	-
GWHAAZE00000006	exon	57328180	57328316	-
GWHAAZE00000006	exon	57327981	57328101	-
GWHAAZE00000006	exon	57322606	57323060	-
GWHAAZE00000006	CDS	57332394	57332708	-
GWHAAZE00000006	CDS	57331568	57332114	-
GWHAAZE00000006	CDS	57330432	57330763	-
GWHAAZE00000006	CDS	57329344	57329402	-
GWHAAZE00000006	CDS	57329219	57329255	-
GWHAAZE00000006	CDS	57328414	57328591	-
GWHAAZE00000006	CDS	57328180	57328316	-
GWHAAZE00000006	CDS	57327981	57328101	-
GWHAAZE00000006	CDS	57322606	57323060	-

Transcript Sequence
>GWHTAAZE021607 ATGTTCAGTCCCCCGTCGGAGGACTTATGCCGTCGCTTTTCACTCCTTGAGATTCTAGCGGCCACCAACAATTTCGACAATTCCATGGTTATAGGTAAGGGTGGATTCGGTACGGTTTACAAAGGGGATATCATTGATAATGATGGCGCATATACTACTGTTGCTTTCAAGCGTTTGAATCCCTTGTCCAAGCAAGGTGCTCCTGAGTTTTGGACCGAGATTAATATGCTATCAAATTTTCGACATAGCCACCTCGTTTCTTTGATAGGCTATTGCGATCATCATAACGAGATGATTATTGTTTACGAGTATATGGAGGTCACCCATGTTAGCACTGCGCACATTGCAGGCACATTCGGTTATATGGATCCAGATTATTTCTTGACTCGCAGATTCACGAGGAAATCAGACGTGTATGCGTTTGGGGTGGTATTGTTGGAAGTACTCTGTGAGAGGCCGGCTCTGGATCGAAGCCTTGATGAGGACCAATGGGGTCTTGCTAGATGGGGCCAGCAGTGCATCAAAGAAGGAGCATCACATCAGATTATTGGGCCGAATTTGAAGTGGGAAATCAAGCAAAATTCTCTCACGGAATTTGTGCAAATTGCCGATCAATGCTTGCATAGTCGACCAAAGCAACGTCCTACAATGTCTGAGGTGGTGGCCAGACTTGAGCTTGCGTTGGCATTGCAACTACGCACCGATCTTGTGATCGAGGAGTATTTTTTTGATACTAGCTTGCCTGCTAACGACCAAGAAAATGTGGATTCTCATCCGGAGGACAACCATTCTGATAAAGTTGTACAGCTAGGGGATTCAAGCAGCAGACAGTTTTTCCAACTCGGAGCTCCGGTAGTCTCGGTACATAATGATGCAAAACCATCGAGTAATGCTAAAAGCAACAACAACAGCGGCCATAATAGCACATTGTTGAACAAAGATGGAGGCAGCGCCCAGGATGTGCCTACAGGTGGGCAAATTGTGACTCCAAATTTGAAAACATTCACATTCGCTGAATTAAAAAGGGCAACTAAGAACTTCACACTGGATGTGTTGGGCATGGGAGGTTTTGGAATTGTTTTCAAAGGTTGGGTTAATGAGAAGACATATTCCCCGTCAAAGGTTGGTATTGGGAAAGCGGTTGCCATTAAGAGGTTAAGGCGAGAGAGCATGCAAGGACTTGCTGAAGGGCTGGTCAGGCAGACCGGCCAAGCCACTTGGCATTCTATAAAAAGGAAGCGCCGGTGGTACTGGGTGCCCCCTGACCCATTGGGCCATGCAAGTGGTAAGATGGAAATCGAAATTTTGGGAAAATTTAGTCATCCTAATATTGTGAAGCTCTTAGGGTACTACCGTGGGGAAGACGAGGAATTCCTCCTTGTTTATGAATACATGCAGAATGGAAGCTTTGATCGACACCTTTTCAGAACAGAAGAAAGCCCAGTTTTAGAATGTGAATTGAGCACTCAAGGTGCAAAATCACTTCCATGGGACACACGGCTTAAAATAGCAGTAGGAGCAGCTCGAGGCCTTTCTTTCTTGCATGCAACAGAGAATCAAATCATAGTCCGAGATGTTCAGACCAAAAATATATTGCTGGATGGGGATTTTAATGCAAAACTTTCGGTTTTGATGTGCAAAGGACATCCTGAAGATGGGGAGTCCCACGCTTCAACAAGAGTTATCGGTACCTTTGGTTATGCAGCTCCGGAGTACGTAGCCACTGGATGTTTGTATCTGAAAAGCGATGTCTATGGTTTTGGGGTGGTGTTGCTCGAATTACTAACAGGTTTGAGGGTGCTCGATAGGAGAAGGACTGGAAAGATTAGTTTGGTGAAATGGGCCAAGCCTTTGCTGCCTCACAAAGAAATGCTTACGAGAGTAGTGGATCCAAGGCTGGAAAATGATTACCCTCCACAAGAAGCCTTCAAATTGGCTTCACTTATACTACAATGTCTTCAAAATGATCCCAAAGTCCGGCCTTCAATGAATGAAGTATTTCAGAGTTTAGAACAATTTAGATCCATCAAGAAGGGTAACTCCAAAGTGGAGGTGACTCAGGCTAGGCATCCTGCGGCTCAAAGAGAGATGACACCCGACAAGAATACAGTTCAAAGAGAGGTGACACCCTACAAATTCCTGTGGTCATGGACTCGTTGTTTGTGGGGAAGCAACTCATAG

Network for GWHGAAZE021583

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	29	108	2.20E-13
PF00069.26	Pkinase	112	222	1.90E-10
PF07714.18	PK_Tyr_Ser-Thr	431	670	6.50E-29

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.259
	SRR3591706	second leaf	0.021
	SRR3591707	mature leaf	0.080
	SRR3591708	Shoot apex	0.225
	SRR3591709	Stem	0.189
	SRR3591710	White floral bud	0.348
	SRR3591711	White flower	0.392
	SRR3591712	Green floral bud	0.211
	SRR3591713	Yellow flower	0.296
SRP173429	SRR8316895	Juvenile bud stage	0.282
	SRR8316896	Juvenile bud stage	0.284
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.171
	SRR8316900	Third green stage	0.375
	SRR8316901	Third green stage	0.182
	SRR8316898	Complete white stage	0.031
	SRR8316899	Complete white stage	0.208
	SRR8316903	Complete white stage	0.075
	SRR8316902	Silver flowering stage	0.137
	SRR8316904	Silver flowering stage	0.114
	SRR8316905	Silver flowering stage	0.058
	SRR8316906	Gold flowering stage	0.387
	SRR8316907	Gold flowering stage	0.159
	SRR8316908	Gold flowering stage	0.082
SRP132670	SRR6706286	Control	0.331
	SRR6706287	Light intensity 50%	0.162
	SRR6706288	Light intensity 20%	0.251
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.123
	CNS0095593	Slightly white alabastrum(diploid) 2	0.391
	CNS0095594	Slightly white alabastrum(diploid) 3	0.166
	CNS0095595	Whole white alabastrum(diploid) 2	0.332
	CNS0095596	Whole white alabastrum(diploid) 3	0.312
	CNS0095597	Whole white alabastrum(diploid) 4	0.313
	CNS0095598	Silvery flower (diploied) 1	0.179
	CNS0095599	Silvery flower (diploied) 2	0.073
	CNS0095600	Silvery flower (diploied) 3	0.142
	CNS0095601	Golden flower (diploid) 1	0.051
	CNS0095602	Golden flower (diploid) 2	0.118
	CNS0095603	Golden flower (diploid) 3	0.255
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.166
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.473
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.174
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.173
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.348
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.176
	CNS0095610	Silvery flower (tetraploid) 1	0.211
	CNS0095611	Silvery flower (tetraploid) 2	0.100
	CNS0095612	Silvery flower (tetraploid) 3	0.066
	CNS0095613	Golden flower (tetraploid) 1	0.134
	CNS0095614	Golden flower (tetraploid) 2	0.178
	CNS0095615	Golden flower (tetraploid) 3	0.327
CRA001975	CRR073297	Stem 1	0.161
	CRR073298	Stem 2	0.529
	CRR073299	Stem 3	0.237
	CRR073300	Leaf 1	0.325
	CRR073301	Leaf 2	0.503
	CRR073302	Leaf 3	0.215
	CRR073303	Juvenile bud 1	0.553
	CRR073304	Juvenile bud 2	0.130
	CRR073305	Juvenile bud 3	0.495
	CRR073306	Third green 1	0.164
	CRR073307	Third green 2	0.155
	CRR073308	Third green 3	0.278
	CRR073309	Second white 1	0.208
	CRR073310	Second white 2	0.312
	CRR073311	Second white 3	0.334
	CRR073312	Silver flowering 1	0.114
	CRR073313	Silver flowering 2	0.063
	CRR073314	Silver flowering 3	0.078
	CRR073315	Gold flowering 1	0.012
	CRR073316	Gold flowering 2	0.144
	CRR073317	Gold flowering 3	0.104
	CRR073318	Tawny withering 1	1.792
	CRR073319	Tawny withering 2	2.564
	CRR073320	Tawny withering 3	1.498