Gene detail

Detail information of GWHGAAZE021574

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009792375.1	1.25526E-98	PREDICTED: probable serine/threonine-protein kinase NAK isoform X3 [Nicotiana sylvestris]
COG	YP_002524068.1	0.000003	serine/threonine-protein kinase PksC
Swissprot	tr\|Q06548\|APK1A_ARATH	4E-73	Protein kinase APK1A, chloroplastic (Precursor)
trEMBL	tr\|M1AM81\|M1AM81_SOLTU	7E-98	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400025863}
TAIR10	AT1G76360.1	1E-71	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	57168295	57177788	-
GWHAAZE00000006	mRNA	57168295	57177788	-
GWHAAZE00000006	exon	57177733	57177788	-
GWHAAZE00000006	exon	57176935	57177259	-
GWHAAZE00000006	exon	57175099	57175215	-
GWHAAZE00000006	exon	57174867	57174984	-
GWHAAZE00000006	exon	57168295	57168719	-
GWHAAZE00000006	CDS	57177733	57177788	-
GWHAAZE00000006	CDS	57176935	57177259	-
GWHAAZE00000006	CDS	57175099	57175215	-
GWHAAZE00000006	CDS	57174867	57174984	-
GWHAAZE00000006	CDS	57168295	57168719	-

Transcript Sequence
>GWHTAAZE021598 ATGGGTCTTGGGGCGACTCGAATTAGGCAACTCGCTAATGTGGCATATATGAATTGTGATGCAAAACCATCAAGTAACGCTAAAAGCAATAACAACTGTGGCCATAATAGCACATTGTCGAACAAAGATGGAGGCAATGTCCAGGATGTGCCCACAAGTGGGCAAATTGTGACTCCAAATTTGAAAATATTCACATTCGCTGAATTAAAAAGTGCAACTAAGAACTTCAGTGTGGATGTGTTGGATGAGGGAGGTTTTGGAAATTTTTTCAAAGGTTGGGTCAATCAGAAGACATATTCCCCGTCAAAGGTTGGAGTTGGGAAAGCCGTCGCCATTAAGAGGTTAGGGCAAGAGAGCATGCAAGGACCTGCTGAAGGGCTGCAACTTGTTGCATTTGCAGAAAGTGCAAAATCACTTCCATGGGACACACGGCTTAAAATAGCAGTAGGAACAGCTCGAGGCCATTCTTTCTTGCATGCAACAGAGAATCAAGTCATAGATTTTAATGCAAAGCTTTCGGGTTTCGGATGTGCAAAGAGATATCCTGAAAATGGGGAGTCCCACGTTTCAACAAGAGTTATAGGTGGTTATCCAGCTCCAGAGTACATAGCTACTGGATATTTGTATCCGAAAAGCGATGTCTACGGTTTTGGAGTGGTGTTGCCTGAATTACTAACAGGTTTGAGGGTGCTTGATAGGAATAAGCCCACCAAAAAGATTAATTTGGTGGCATGGGCCAAGCCTTTGCTACCTCGCAAAAAAATTCTCAGGATATTAGTGGATCCAAGGCTGGAAAATGATTACCCTCCACAAGAAGCCTTCGAATTGGCTTCACTTATACTACAATGTCTTCATACTTACCCCAAAGTCCGGCCTTCAATGAACGAAGTATTGCAGAGTTTAGAACAAATTAACTCCATCAAGAAGGGTAACTCCAAAGTGGAGGTGGGTCAGGCTAGGCATCCTACGGTTCAAAGAGAGGCGACACCATACAAATTCTTGTGGTCATGGACTCGTGGTTTGGGAGGAAGCAACTCATAG

Network for GWHGAAZE021574

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	166	300	3.90E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.059
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.036
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.072
	SRR3591710	White floral bud	0.007
	SRR3591711	White flower	0.015
	SRR3591712	Green floral bud	0.013
	SRR3591713	Yellow flower	0.111
SRP173429	SRR8316895	Juvenile bud stage	0.130
	SRR8316896	Juvenile bud stage	0.258
	SRR8316897	Juvenile bud stage	0.166
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.400
	SRR8316901	Third green stage	0.141
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.070
	SRR8316904	Silver flowering stage	0.051
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.069
	SRR6706287	Light intensity 50%	0.062
	SRR6706288	Light intensity 20%	0.131
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.040
	CNS0095593	Slightly white alabastrum(diploid) 2	0.044
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.030
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.018
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.005
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.015
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.134
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.036
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.056
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.040
	CNS0095610	Silvery flower (tetraploid) 1	0.017
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.026
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.012
CRA001975	CRR073297	Stem 1	0.018
	CRR073298	Stem 2	0.128
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.059
	CRR073301	Leaf 2	0.112
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.001
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.056
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.021
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.022
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.025
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.016
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000