Detail information of GWHGAAZE021561


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDY44732.11.27905E-45BnaA05g28740D [Brassica napus]
COGYP_001213067.12E-26isocitrate/isopropylmalate dehydrogenase
Swissprottr|Q8LG77|IDH6_ARATH9E-48Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial (Precursor)
trEMBLtr|A0A078I3T9|A0A078I3T9_BRANA5E-46BnaA05g28740D protein {ECO:0000313|EMBL:CDY44732.1}
TAIR10AT3G09810.11E-39isocitrate dehydrogenase VI

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5679430356794629-
GWHAAZE00000006mRNA5679430356794629-
GWHAAZE00000006exon5679430356794359-
GWHAAZE00000006exon5679444756794629-
GWHAAZE00000006CDS5679444756794629-
GWHAAZE00000006CDS5679430356794359-
Transcript Sequence

Network for GWHGAAZE021561

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00180.21Iso_dh2646.80E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00030IDH3 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cyclemap00020

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.680
SRR3591706second leaf13.981
SRR3591707mature leaf5.009
SRR3591708Shoot apex5.783
SRR3591709Stem8.882
SRR3591710White floral bud17.559
SRR3591711White flower15.965
SRR3591712Green floral bud18.118
SRR3591713Yellow flower12.212
SRP173429 SRR8316895Juvenile bud stage 2.872
SRR8316896Juvenile bud stage 2.774
SRR8316897Juvenile bud stage 1.689
SRR8316894Third green stage 1.345
SRR8316900Third green stage 5.156
SRR8316901Third green stage 6.931
SRR8316898Complete white stage 3.673
SRR8316899Complete white stage 5.958
SRR8316903Complete white stage 5.874
SRR8316902Silver flowering stage2.833
SRR8316904Silver flowering stage4.014
SRR8316905Silver flowering stage1.605
SRR8316906Gold flowering stage 4.596
SRR8316907Gold flowering stage 5.610
SRR8316908Gold flowering stage 8.530
SRP132670SRR6706286Control0.215
SRR6706287Light intensity 50%0.688
SRR6706288Light intensity 20%1.232
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.547
CNS0095593Slightly white alabastrum(diploid) 23.360
CNS0095594Slightly white alabastrum(diploid) 34.511
CNS0095595Whole white alabastrum(diploid) 22.350
CNS0095596Whole white alabastrum(diploid) 32.788
CNS0095597Whole white alabastrum(diploid) 43.164
CNS0095598Silvery flower (diploied) 18.463
CNS0095599Silvery flower (diploied) 23.691
CNS0095600Silvery flower (diploied) 38.268
CNS0095601Golden flower (diploid) 12.298
CNS0095602Golden flower (diploid) 29.526
CNS0095603Golden flower (diploid) 36.831
CNS0095604Slightly white alabastrum(tetraploid) 120.942
CNS0095605Slightly white alabastrum(tetraploid) 213.051
CNS0095606Slightly white alabastrum(tetraploid) 322.460
CNS0095607Whole white alabastrum(tetraploid) 14.308
CNS0095608Whole white alabastrum(tetraploid) 23.572
CNS0095609Whole white alabastrum(tetraploid) 332.385
CNS0095610Silvery flower (tetraploid) 125.194
CNS0095611Silvery flower (tetraploid) 228.657
CNS0095612Silvery flower (tetraploid) 328.314
CNS0095613Golden flower (tetraploid) 116.100
CNS0095614Golden flower (tetraploid) 230.119
CNS0095615Golden flower (tetraploid) 33.552
CRA001975CRR073297Stem 17.422
CRR073298Stem 29.805
CRR073299Stem 310.604
CRR073300Leaf 19.235
CRR073301Leaf 28.089
CRR073302Leaf 314.400
CRR073303Juvenile bud 111.247
CRR073304Juvenile bud 213.690
CRR073305Juvenile bud 313.789
CRR073306Third green 120.026
CRR073307Third green 213.048
CRR073308Third green 310.602
CRR073309Second white 125.124
CRR073310Second white 29.660
CRR073311Second white 37.364
CRR073312Silver flowering 119.902
CRR073313Silver flowering 217.248
CRR073314Silver flowering 312.106
CRR073315Gold flowering 12.511
CRR073316Gold flowering 26.545
CRR073317Gold flowering 37.965
CRR073318Tawny withering 18.600
CRR073319Tawny withering 27.409
CRR073320Tawny withering 36.796