Detail information of GWHGAAZE021531


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009354690.14.3295E-144PREDICTED: 60S ribosomal protein L6-1-like [Pyrus x bretschneideri]
Swissprottr|P34091|RL6_MESCR6E-13160S ribosomal protein L6
trEMBLtr|A0A078D3U6|A0A078D3U6_BRANA1E-135BnaC08g18050D protein {ECO:0000313|EMBL:CDX83840.1}
TAIR10AT1G74050.14E-93Ribosomal protein L6 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5613721956139964-
GWHAAZE00000006mRNA5613721956139964-
GWHAAZE00000006exon5613721956137374-
GWHAAZE00000006exon5613747656137657-
GWHAAZE00000006exon5613883356138939-
GWHAAZE00000006exon5613970856139964-
GWHAAZE00000006CDS5613970856139964-
GWHAAZE00000006CDS5613883356138939-
GWHAAZE00000006CDS5613747656137657-
GWHAAZE00000006CDS5613721956137374-
Transcript Sequence

Network for GWHGAAZE021531

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03868.16Ribosomal_L6e_N3582.00E-15
PF01159.20Ribosomal_L6e1262332.00E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02934RP-L6e, RPL6 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf492.072
SRR3591706second leaf182.004
SRR3591707mature leaf106.611
SRR3591708Shoot apex588.917
SRR3591709Stem239.695
SRR3591710White floral bud174.456
SRR3591711White flower233.480
SRR3591712Green floral bud390.089
SRR3591713Yellow flower151.575
SRP173429 SRR8316895Juvenile bud stage 272.871
SRR8316896Juvenile bud stage 370.580
SRR8316897Juvenile bud stage 191.128
SRR8316894Third green stage 157.409
SRR8316900Third green stage 514.009
SRR8316901Third green stage 464.640
SRR8316898Complete white stage 92.325
SRR8316899Complete white stage 426.884
SRR8316903Complete white stage 145.246
SRR8316902Silver flowering stage92.638
SRR8316904Silver flowering stage94.046
SRR8316905Silver flowering stage47.872
SRR8316906Gold flowering stage 144.807
SRR8316907Gold flowering stage 146.211
SRR8316908Gold flowering stage 169.600
SRP132670SRR6706286Control272.850
SRR6706287Light intensity 50%287.992
SRR6706288Light intensity 20%341.258
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1412.133
CNS0095593Slightly white alabastrum(diploid) 2486.763
CNS0095594Slightly white alabastrum(diploid) 3420.400
CNS0095595Whole white alabastrum(diploid) 2367.098
CNS0095596Whole white alabastrum(diploid) 3395.777
CNS0095597Whole white alabastrum(diploid) 4298.545
CNS0095598Silvery flower (diploied) 1217.734
CNS0095599Silvery flower (diploied) 2188.273
CNS0095600Silvery flower (diploied) 3162.906
CNS0095601Golden flower (diploid) 1167.808
CNS0095602Golden flower (diploid) 2145.195
CNS0095603Golden flower (diploid) 3144.397
CNS0095604Slightly white alabastrum(tetraploid) 1395.399
CNS0095605Slightly white alabastrum(tetraploid) 2396.169
CNS0095606Slightly white alabastrum(tetraploid) 3520.103
CNS0095607Whole white alabastrum(tetraploid) 1218.376
CNS0095608Whole white alabastrum(tetraploid) 2200.251
CNS0095609Whole white alabastrum(tetraploid) 3359.333
CNS0095610Silvery flower (tetraploid) 1165.071
CNS0095611Silvery flower (tetraploid) 2126.509
CNS0095612Silvery flower (tetraploid) 396.258
CNS0095613Golden flower (tetraploid) 182.667
CNS0095614Golden flower (tetraploid) 2123.073
CNS0095615Golden flower (tetraploid) 359.968
CRA001975CRR073297Stem 1331.944
CRR073298Stem 2347.461
CRR073299Stem 3353.211
CRR073300Leaf 1350.490
CRR073301Leaf 2348.305
CRR073302Leaf 3391.274
CRR073303Juvenile bud 1354.941
CRR073304Juvenile bud 2276.008
CRR073305Juvenile bud 3260.772
CRR073306Third green 145.589
CRR073307Third green 260.216
CRR073308Third green 368.453
CRR073309Second white 160.349
CRR073310Second white 253.599
CRR073311Second white 329.946
CRR073312Silver flowering 143.443
CRR073313Silver flowering 260.622
CRR073314Silver flowering 335.628
CRR073315Gold flowering 1124.149
CRR073316Gold flowering 2157.541
CRR073317Gold flowering 3107.977
CRR073318Tawny withering 1330.962
CRR073319Tawny withering 2308.722
CRR073320Tawny withering 3386.050