Gene detail

Detail information of GWHGAAZE021514

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99459.1	1.0778E-130	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SAK5\|APL_ARATH	9E-57	Myb family transcription factor APL
trEMBL	tr\|A0A068TU04\|A0A068TU04_COFCA	4E-131	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99459.1}
TAIR10	AT4G13640.1	6E-70	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	55795993	55803030	-
GWHAAZE00000006	mRNA	55795993	55803030	-
GWHAAZE00000006	exon	55802676	55803030	-
GWHAAZE00000006	exon	55799284	55799360	-
GWHAAZE00000006	exon	55797290	55797381	-
GWHAAZE00000006	exon	55796923	55796992	-
GWHAAZE00000006	exon	55795993	55796406	-
GWHAAZE00000006	CDS	55802676	55803030	-
GWHAAZE00000006	CDS	55799284	55799360	-
GWHAAZE00000006	CDS	55797290	55797381	-
GWHAAZE00000006	CDS	55796923	55796992	-
GWHAAZE00000006	CDS	55795993	55796406	-

Transcript Sequence
>GWHTAAZE021538 ATGCATGCTTCTCCTCTTCCCAATACACAAACACTACTCACCCAAAAACCTCCTCACTCCCCCACCTTCGGGGCTCCGAAAACCCTTTTATCAGTTAAACGGGTCACTGAAATTTCTCAGGAAAATTCTTTACTTGGGGAGCTGGATTTTCCCAGGAAAATGTACTCGGGGATTCCCTCGCTTCCGCTGGAACTGGAAGGGGGCGAATACAGCAGGGGGTCGATGATTGACGAGGGGAACATAATGGGAGATCCGTGTTTGGTTTTGACATCGGATCCGAAGCCCCGGCTCCGGTGGACCTCGGAGCTCCATGAGAGATTCGTTGATGCTGTCACTCAGCTCGGTGGCCCTGATAAAGCAACACCGAAGACAATCATGAGAACCATGGGAGTGAAAGGCCTCACCCTTTACCATTTGAAGTCACATCTTCAGTTTGGGATTGCAGTATCTTGCATTGCGGAGAGTCAGGACACAGACTCATCTACATCGGCCTCATCGAGAATGATGGCTCAAAATTTGAACGATGGGTACCAGGTCACTGAGGCTTTGCGGGTGCAGATGGAAGTCCAGCGAAGACTGCACGAGCAACTGGAGGTTCAACGCCGCCTTCAACTCCGAATCGAAGCACAAAGCAGATACCTACAATCAATCCTCGAAAAAGCGTGCAAAGCCCTCAATGACCAGGCTGCGGCCACAGCTGGGCTCGAAGCTGCAAGAGAAGAGCTCTCGGAGCTAGCCATCAAAGCCGCCACTATCGACTCTCACGGTTCGACCTCGGTGCTGCCTATAGGAGAAAACGGCCCCACCACTATGCCGGCTCGTATTGGTGACTGCTCTGTTGATAGCTGCTTGACCTCAAACGGAAGCCCGGTTTCTCCTATGGGCAGTGGCGTAATTTCACAGGCGGCAGCATTGAAGAAGAGACAGAGGGCTGTTTTTAGCACTGGAGATTCGCAGGTTGTCGACGGTAATTTCAGGCAGGAGTGGAGGATGGCCAATATTGGATGA

Network for GWHGAAZE021514

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	97	144	2.00E-05
PF14379.7	Myb_CC_LHEQLE	178	224	1.00E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.834
	SRR3591706	second leaf	5.758
	SRR3591707	mature leaf	1.964
	SRR3591708	Shoot apex	35.682
	SRR3591709	Stem	11.288
	SRR3591710	White floral bud	3.296
	SRR3591711	White flower	3.972
	SRR3591712	Green floral bud	5.443
	SRR3591713	Yellow flower	1.118
SRP173429	SRR8316895	Juvenile bud stage	5.222
	SRR8316896	Juvenile bud stage	8.161
	SRR8316897	Juvenile bud stage	2.882
	SRR8316894	Third green stage	1.571
	SRR8316900	Third green stage	1.716
	SRR8316901	Third green stage	2.504
	SRR8316898	Complete white stage	0.063
	SRR8316899	Complete white stage	1.540
	SRR8316903	Complete white stage	0.294
	SRR8316902	Silver flowering stage	0.094
	SRR8316904	Silver flowering stage	0.099
	SRR8316905	Silver flowering stage	0.061
	SRR8316906	Gold flowering stage	0.216
	SRR8316907	Gold flowering stage	0.636
	SRR8316908	Gold flowering stage	0.735
SRP132670	SRR6706286	Control	2.850
	SRR6706287	Light intensity 50%	1.778
	SRR6706288	Light intensity 20%	1.738
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.570
	CNS0095593	Slightly white alabastrum(diploid) 2	5.226
	CNS0095594	Slightly white alabastrum(diploid) 3	4.597
	CNS0095595	Whole white alabastrum(diploid) 2	2.261
	CNS0095596	Whole white alabastrum(diploid) 3	1.845
	CNS0095597	Whole white alabastrum(diploid) 4	2.150
	CNS0095598	Silvery flower (diploied) 1	5.521
	CNS0095599	Silvery flower (diploied) 2	4.897
	CNS0095600	Silvery flower (diploied) 3	1.671
	CNS0095601	Golden flower (diploid) 1	4.750
	CNS0095602	Golden flower (diploid) 2	2.384
	CNS0095603	Golden flower (diploid) 3	2.631
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.306
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.705
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.236
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.355
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.298
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.257
	CNS0095610	Silvery flower (tetraploid) 1	0.405
	CNS0095611	Silvery flower (tetraploid) 2	0.884
	CNS0095612	Silvery flower (tetraploid) 3	0.566
	CNS0095613	Golden flower (tetraploid) 1	0.773
	CNS0095614	Golden flower (tetraploid) 2	0.998
	CNS0095615	Golden flower (tetraploid) 3	0.043
CRA001975	CRR073297	Stem 1	4.690
	CRR073298	Stem 2	5.484
	CRR073299	Stem 3	9.085
	CRR073300	Leaf 1	3.018
	CRR073301	Leaf 2	2.012
	CRR073302	Leaf 3	2.030
	CRR073303	Juvenile bud 1	2.141
	CRR073304	Juvenile bud 2	0.383
	CRR073305	Juvenile bud 3	1.494
	CRR073306	Third green 1	0.042
	CRR073307	Third green 2	0.268
	CRR073308	Third green 3	0.267
	CRR073309	Second white 1	0.023
	CRR073310	Second white 2	0.045
	CRR073311	Second white 3	0.067
	CRR073312	Silver flowering 1	0.041
	CRR073313	Silver flowering 2	0.068
	CRR073314	Silver flowering 3	0.908
	CRR073315	Gold flowering 1	1.960
	CRR073316	Gold flowering 2	2.874
	CRR073317	Gold flowering 3	3.504
	CRR073318	Tawny withering 1	12.310
	CRR073319	Tawny withering 2	8.884
	CRR073320	Tawny withering 3	11.888