Gene detail

Detail information of GWHGAAZE021513

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99461.1	0	unnamed protein product [Coffea canephora]
COG	YP_005517714.1	1E-18	serine/threonine protein kinase with PASTA sensor(s)
Swissprot	tr\|O48837\|LRKS2_ARATH	0	Receptor like protein kinase S.2
trEMBL	tr\|A0A068TT71\|A0A068TT71_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99461.1}
TAIR10	AT2G32800.1	0	protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	55787660	55790164	+
GWHAAZE00000006	mRNA	55787660	55790164	+
GWHAAZE00000006	exon	55787660	55790164	+
GWHAAZE00000006	CDS	55787660	55790164	+

Transcript Sequence
>GWHTAAZE021537 ATGCAGTTGAGCCGCCTCTGCTACGTTTTGCCGGCAGACTCGGACGAAATTGAGCCGGTTCACCATAATCATGATAATCAAACATCAACAAAAGAGCCACAACCCCACCGCCACTGCGGCAGCCAAGTAACTGCCATCCTCCGCCACTCGCTCCACCGGTTCTTTGACTTGAAATGGTTAACCTTTTCGTGTTTTTGTTATGCAAAAAGTCAAAACTCCGGTTCTTTCCACGATACTGAAGGAGTTAACTTCTCCGAGAAAGTCGGTGGCGATAATCCGAGGACTTTTAGCTATGCCGAGCTCTACATAGGCTCTAGTGGATTTAGTGAAGATGAAGTTCTTGGAAGTGGAGGTTTTGGTAGGGTTTATAGAGCAGTTTTACCGAGCGATGGAACAATCGTGGCCGTTAAATGCGTGGCGGAGAGGGGGGAAAGGTTCGAGAAGACGTTCGCAGCTGAGCTGGTGGCAGTGGCCCATCTCCGCCACCGGAATCTTGTCCGCCTCCGTGGGTGGTGTGTCCATGAAGACCAATTGCTTCTTGTCTATGACTACATGCCTAACCGGAGCCTCGACAGGGTACTTTTTCGGCGGCCAGAAAGTAAAGGGGCAGCGGCACCACCACTGCTTAGTTGGGAGAGGAGGAAAAAAATAATTGGCGGGTTGGCGGCGGCACTTTATTATCTACATGAACAATTGGAGACTCAAATCATACACCGGGACGTGAAGACTAGCAATGTTATGCTCGACTCTAATTATAACGCGAGGCTAGGCGATTTTGGCTTGGCTAGGTGGCTCGAACACGAGCTTGAGTACCGGATAAGCACGCCATCGGTCAAGAACCGGCAGTTCCGGCTGGCAGAAACCACCAGAATTGGCGGCACGATTGGGTACTTGCCACCAGAGAGCTTCCAAAGACGGAGCATTGCCACAGCAAAGTCCGACGTTTTTAGCTTCGGGATCGTAGTGTTGGAGGTGGTTTCGGGGCGGCGAGCAGTGGATCTAACGTTCCAAGACGATAAAATTGTCTTGCTTGATTGGATCCGAAGACTCTCTGATGAAGGGAGCCTTCTAGAAGCGGGGGATAGCCGGCTTCTAGATGGGTCCTACAAGCTTTCCGAGATGGAACAGTTGATCCATCTCGGACTCCTATGCACCCTTCATGAACCGCGGTCAAGACCTAACATGAAATGGGTAGTGGAAGCGCTTTCCGGCCAATTTTACAAGTTGCCGGATCTTCCTTCCTTTAAATCCCACCCTCTATACATCTCTCTATCTTCCCCAACAAGCAGTGGCACCAGCAACACGAGATCACCCAACACCGTCACCTCCAGTGGGAGGTCATCATCCACCACCACCACCACTACCGCCAGCGCTACCACCGTTTCATCCACTTTTGTTACCGCCAATGGAGAAACCATGTATGCAACAGCAGAAAACGGAGATGGTGATATCCGGTCTACCGACAGCCGCCGCTGCCAATCGAGTCCTTTTCTGATGGTCGAAACTCCTCGCGAAATAACCTTCAAGGAACTTGTTTCTGCCACAAACAATTTCTCTGATTCTCGAAGAGTGGCAGAGCTAGACTTCGGAACGGCTTACCACGGCTTCCTCGAAAACCGCCACCACATACTCGTAAAGAGACTGGGCATGAAGACATGCCCAGCGTTGCGAGCCCGCTTCTCGAACGAGCTCCAAAATCTAGGGAGGCTCCGCCACCGGAACCTCATACAGCTCCGTGGATGGTGCACTGAGCAAGGAGAGATGCTCGTGGTCTACGATTACTCGGCGAATTGCCTCTTAAGCAACCGCCTTTTCCATCACGACCGGAAGATCCTAAGATGGAACAACCGTTACAACATAGTCAAATCGCTGGCCTCGGCGATTCTTTATCTCCATGAAGAATGGGAAGAGCAAGTGATCCACCGGAATATTACCTCCTCCGCTGTGATTCTTGATCCAGACCTAAACCCGAGGCTCACTTGCTTCGCCCTAGCCGAGTTCTTGACAAGGAACGAGCATAGCCACCATGTGGTGATCGACAAGAAGAGCTCGGTCCGCGGGATTTTTGGGTACATATCGCCGGAAAGTATGGAATCTGACGGTGGTGCCACCACCATGGCTGATGTTTACAGCTTTGGAGTGGTGGTTCTCGAGGTGGTTAGCGGTCAAATGGCTGTTGACTTCCGGCGCCCCGAGGTACTATTGGTGAGGAGAGTACAAGAGTTCGAAGCACGGAAGAGGAAGTACGAGGAATTGGCAGATTGGAGAATGGACGGAGAGTACAATCACAAGGAGCTGGTGAGGCTGGTGAAATTAGGAATGGCGTGCACGAGATCAAACCCGGAGTTGAGACCGAGTATGAGGGAGATTGTGAGAATACTTGATGGGAATGATAGATGTTTTATGGAAGAAGGGATGAAGAAAGAGAAAATGGAAGAATGGAAAGAGAAAAATGCTTGTTCTTTGGCATTGGTTAGGAGAATCCAAGCTCTAGGAATACAATGA

Network for GWHGAAZE021513

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	109	333	2.30E-41
PF07714.18	PK_Tyr_Ser-Thr	524	794	2.20E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.065
	SRR3591706	second leaf	1.410
	SRR3591707	mature leaf	1.802
	SRR3591708	Shoot apex	3.881
	SRR3591709	Stem	15.566
	SRR3591710	White floral bud	3.576
	SRR3591711	White flower	17.594
	SRR3591712	Green floral bud	2.172
	SRR3591713	Yellow flower	35.745
SRP173429	SRR8316895	Juvenile bud stage	2.620
	SRR8316896	Juvenile bud stage	3.356
	SRR8316897	Juvenile bud stage	1.593
	SRR8316894	Third green stage	1.239
	SRR8316900	Third green stage	1.538
	SRR8316901	Third green stage	1.756
	SRR8316898	Complete white stage	0.164
	SRR8316899	Complete white stage	2.977
	SRR8316903	Complete white stage	0.615
	SRR8316902	Silver flowering stage	1.115
	SRR8316904	Silver flowering stage	0.886
	SRR8316905	Silver flowering stage	0.642
	SRR8316906	Gold flowering stage	9.014
	SRR8316907	Gold flowering stage	6.504
	SRR8316908	Gold flowering stage	12.931
SRP132670	SRR6706286	Control	1.861
	SRR6706287	Light intensity 50%	2.286
	SRR6706288	Light intensity 20%	1.941
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.505
	CNS0095593	Slightly white alabastrum(diploid) 2	6.345
	CNS0095594	Slightly white alabastrum(diploid) 3	4.815
	CNS0095595	Whole white alabastrum(diploid) 2	4.271
	CNS0095596	Whole white alabastrum(diploid) 3	1.089
	CNS0095597	Whole white alabastrum(diploid) 4	3.215
	CNS0095598	Silvery flower (diploied) 1	8.792
	CNS0095599	Silvery flower (diploied) 2	13.710
	CNS0095600	Silvery flower (diploied) 3	6.814
	CNS0095601	Golden flower (diploid) 1	22.091
	CNS0095602	Golden flower (diploid) 2	23.120
	CNS0095603	Golden flower (diploid) 3	20.524
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.662
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.477
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.010
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.588
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.245
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.409
	CNS0095610	Silvery flower (tetraploid) 1	5.682
	CNS0095611	Silvery flower (tetraploid) 2	3.033
	CNS0095612	Silvery flower (tetraploid) 3	9.137
	CNS0095613	Golden flower (tetraploid) 1	18.671
	CNS0095614	Golden flower (tetraploid) 2	14.221
	CNS0095615	Golden flower (tetraploid) 3	9.518
CRA001975	CRR073297	Stem 1	6.854
	CRR073298	Stem 2	6.280
	CRR073299	Stem 3	2.896
	CRR073300	Leaf 1	4.542
	CRR073301	Leaf 2	5.736
	CRR073302	Leaf 3	1.251
	CRR073303	Juvenile bud 1	2.020
	CRR073304	Juvenile bud 2	2.101
	CRR073305	Juvenile bud 3	3.331
	CRR073306	Third green 1	2.434
	CRR073307	Third green 2	2.463
	CRR073308	Third green 3	1.572
	CRR073309	Second white 1	7.682
	CRR073310	Second white 2	10.654
	CRR073311	Second white 3	11.064
	CRR073312	Silver flowering 1	54.631
	CRR073313	Silver flowering 2	74.672
	CRR073314	Silver flowering 3	60.277
	CRR073315	Gold flowering 1	1.618
	CRR073316	Gold flowering 2	6.351
	CRR073317	Gold flowering 3	9.044
	CRR073318	Tawny withering 1	24.102
	CRR073319	Tawny withering 2	20.069
	CRR073320	Tawny withering 3	29.903