Detail information of GWHGAAZE021506


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010650344.10PREDICTED: high mobility group B protein 15 isoform X1 [Vitis vinifera]
Swissprottr|Q9MAT6|HMG15_ARATH9E-131High mobility group B protein 15
trEMBLtr|A5BNN4|A5BNN4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN83439.1}
TAIR10AT1G04880.15E-108HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5534186355347346-
GWHAAZE00000006mRNA5534186355347346-
GWHAAZE00000006exon5534717155347346-
GWHAAZE00000006exon5534588855345966-
GWHAAZE00000006exon5534487755345039-
GWHAAZE00000006exon5534466655344797-
GWHAAZE00000006exon5534323855343659-
GWHAAZE00000006exon5534186355342489-
GWHAAZE00000006CDS5534717155347346-
GWHAAZE00000006CDS5534588855345966-
GWHAAZE00000006CDS5534487755345039-
GWHAAZE00000006CDS5534466655344797-
GWHAAZE00000006CDS5534323855343659-
GWHAAZE00000006CDS5534186355342489-
Transcript Sequence

Network for GWHGAAZE021506

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01388.22ARID421246.60E-16
PF00505.20HMG_box2783459.40E-16
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyARID

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.485
SRR3591706second leaf2.218
SRR3591707mature leaf4.998
SRR3591708Shoot apex3.445
SRR3591709Stem0.797
SRR3591710White floral bud1.010
SRR3591711White flower0.284
SRR3591712Green floral bud4.184
SRR3591713Yellow flower0.174
SRP173429 SRR8316895Juvenile bud stage 8.175
SRR8316896Juvenile bud stage 18.621
SRR8316897Juvenile bud stage 6.161
SRR8316894Third green stage 4.124
SRR8316900Third green stage 5.597
SRR8316901Third green stage 7.953
SRR8316898Complete white stage 0.109
SRR8316899Complete white stage 0.571
SRR8316903Complete white stage 0.210
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.043
SRR8316905Silver flowering stage0.086
SRR8316906Gold flowering stage 0.307
SRR8316907Gold flowering stage 0.007
SRR8316908Gold flowering stage 4.077
SRP132670SRR6706286Control3.823
SRR6706287Light intensity 50%3.461
SRR6706288Light intensity 20%2.863
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.127
CNS0095593Slightly white alabastrum(diploid) 27.808
CNS0095594Slightly white alabastrum(diploid) 312.673
CNS0095595Whole white alabastrum(diploid) 26.930
CNS0095596Whole white alabastrum(diploid) 37.603
CNS0095597Whole white alabastrum(diploid) 46.641
CNS0095598Silvery flower (diploied) 10.713
CNS0095599Silvery flower (diploied) 21.117
CNS0095600Silvery flower (diploied) 30.217
CNS0095601Golden flower (diploid) 10.500
CNS0095602Golden flower (diploid) 20.260
CNS0095603Golden flower (diploid) 30.328
CNS0095604Slightly white alabastrum(tetraploid) 19.607
CNS0095605Slightly white alabastrum(tetraploid) 210.058
CNS0095606Slightly white alabastrum(tetraploid) 31.031
CNS0095607Whole white alabastrum(tetraploid) 19.992
CNS0095608Whole white alabastrum(tetraploid) 27.849
CNS0095609Whole white alabastrum(tetraploid) 37.449
CNS0095610Silvery flower (tetraploid) 10.112
CNS0095611Silvery flower (tetraploid) 20.024
CNS0095612Silvery flower (tetraploid) 30.365
CNS0095613Golden flower (tetraploid) 10.079
CNS0095614Golden flower (tetraploid) 20.365
CNS0095615Golden flower (tetraploid) 30.008
CRA001975CRR073297Stem 18.066
CRR073298Stem 26.025
CRR073299Stem 33.644
CRR073300Leaf 16.656
CRR073301Leaf 26.469
CRR073302Leaf 33.636
CRR073303Juvenile bud 11.708
CRR073304Juvenile bud 20.770
CRR073305Juvenile bud 30.271
CRR073306Third green 10.000
CRR073307Third green 20.070
CRR073308Third green 30.221
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.021
CRR073312Silver flowering 10.064
CRR073313Silver flowering 20.191
CRR073314Silver flowering 30.000
CRR073315Gold flowering 12.867
CRR073316Gold flowering 22.649
CRR073317Gold flowering 30.823
CRR073318Tawny withering 10.089
CRR073319Tawny withering 20.030
CRR073320Tawny withering 30.000