Gene detail

Detail information of GWHGAAZE021505

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007034359.1	4.9777E-104	AP2/ERF domain-containing transcription factor, putative [Theobroma cacao]
Swissprot	tr\|Q9SVQ0\|ERF62_ARATH	3E-82	Ethylene-responsive transcription factor ERF062
trEMBL	tr\|A0A061EJU1\|A0A061EJU1_THECC	2E-104	AP2/ERF domain-containing transcription factor, putative {ECO:0000313\|EMBL:EOY05285.1}
TAIR10	AT4G13620.1	6E-54	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	55339264	55340226	+
GWHAAZE00000006	mRNA	55339264	55340226	+
GWHAAZE00000006	exon	55339264	55340226	+
GWHAAZE00000006	CDS	55339264	55340226	+

Transcript Sequence
>GWHTAAZE021529 ATGTTCGCAAGTTTAGAGTCCACTTCTTCACTCGAGGACACGAATTTAAGACCTAGCATCCCAAAATTTGTGAAAAATGAGGTGATCCCATTCTTCTCAGGTTTGAATTTTGCCAACTCAAGTGGTACTTCTAGTGATGCCCATGTCAAGGAAGCTTACATTCCTCTAAATTTCCTCGAATCTTTCCCCAAACTTAACCAAGCCCAACCCTCTTCTCCCTCATCGCCACCAAATCTAAGCCTTTTCTTGAACGAGCCTGCGATCATAGACATATCAAAATGCGCAGTAAAATCAATTAGTTCCACCTCATCAACCCCTACTTTGGTACACCCCATGTCCCAAATCAATCAAAACTTGACCAATTACCCCTCAAAAGGCTTTGGTGACTATTGGCTAAGCACAACAAAGACTCAACCAATGAAGGTAACAGCAAGAAAATTACAAACCAACCCCTCCACGCATACCTCACCTATATCAACGTCACAGGCAAAGCTCTTTAGAGGAGTGAGGCAAAGGCACTGGGGAAAATGGGTGGCTGAGATTCGGTTACCGAGGAACCGGACTAGAGTTTGGCTAGGGACATTTGACACAGCTGAAGATGCGGCTTTTGCTTATGATAGTGCCGCGTATATGCTTAGAGGGGACTATGCACATTTAAATTTCCCTGAATTGAAGCACAAGCTCAAATCTAGTGCGATAAATGATACTACCGCGGCCCTTCTTCAGGCTAAATTGCAAGGTTTGGGTGCGGTCAAGAAGCGCAATGAGCCAAATCAAGAACCATTAGAAAGGGTCAAAGATTTGGGCAAAGGTACAACAAGAAAAAGGGGGTGCGAGATGGTGATGGAGAATATGGATCACCAAGAGGTGATATCATCAGATGCTGATTCTGTTCAGTTAAGTAGAATGCCTTCTTTGGACATGGACAGTATATGGGATGCACTTCTTGTCTCTGATTCTTGA

Network for GWHGAAZE021505

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	166	214	4.40E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.857
	SRR3591706	second leaf	0.183
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.332
	SRR3591709	Stem	1.171
	SRR3591710	White floral bud	66.795
	SRR3591711	White flower	157.677
	SRR3591712	Green floral bud	25.242
	SRR3591713	Yellow flower	53.260
SRP173429	SRR8316895	Juvenile bud stage	0.836
	SRR8316896	Juvenile bud stage	1.582
	SRR8316897	Juvenile bud stage	0.334
	SRR8316894	Third green stage	2.419
	SRR8316900	Third green stage	8.293
	SRR8316901	Third green stage	6.338
	SRR8316898	Complete white stage	41.372
	SRR8316899	Complete white stage	27.585
	SRR8316903	Complete white stage	83.110
	SRR8316902	Silver flowering stage	57.399
	SRR8316904	Silver flowering stage	70.336
	SRR8316905	Silver flowering stage	38.271
	SRR8316906	Gold flowering stage	53.847
	SRR8316907	Gold flowering stage	45.646
	SRR8316908	Gold flowering stage	47.124
SRP132670	SRR6706286	Control	20.062
	SRR6706287	Light intensity 50%	27.489
	SRR6706288	Light intensity 20%	24.421
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.162
	CNS0095593	Slightly white alabastrum(diploid) 2	1.401
	CNS0095594	Slightly white alabastrum(diploid) 3	2.569
	CNS0095595	Whole white alabastrum(diploid) 2	2.096
	CNS0095596	Whole white alabastrum(diploid) 3	2.187
	CNS0095597	Whole white alabastrum(diploid) 4	2.400
	CNS0095598	Silvery flower (diploied) 1	15.438
	CNS0095599	Silvery flower (diploied) 2	15.090
	CNS0095600	Silvery flower (diploied) 3	93.905
	CNS0095601	Golden flower (diploid) 1	9.851
	CNS0095602	Golden flower (diploid) 2	45.230
	CNS0095603	Golden flower (diploid) 3	40.860
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.486
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.939
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.330
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.431
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.396
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.310
	CNS0095610	Silvery flower (tetraploid) 1	49.040
	CNS0095611	Silvery flower (tetraploid) 2	16.235
	CNS0095612	Silvery flower (tetraploid) 3	18.974
	CNS0095613	Golden flower (tetraploid) 1	14.121
	CNS0095614	Golden flower (tetraploid) 2	15.658
	CNS0095615	Golden flower (tetraploid) 3	34.421
CRA001975	CRR073297	Stem 1	4.108
	CRR073298	Stem 2	5.713
	CRR073299	Stem 3	2.745
	CRR073300	Leaf 1	28.224
	CRR073301	Leaf 2	13.899
	CRR073302	Leaf 3	21.604
	CRR073303	Juvenile bud 1	28.463
	CRR073304	Juvenile bud 2	50.145
	CRR073305	Juvenile bud 3	46.716
	CRR073306	Third green 1	60.361
	CRR073307	Third green 2	108.814
	CRR073308	Third green 3	99.534
	CRR073309	Second white 1	56.688
	CRR073310	Second white 2	41.694
	CRR073311	Second white 3	31.810
	CRR073312	Silver flowering 1	28.727
	CRR073313	Silver flowering 2	29.805
	CRR073314	Silver flowering 3	40.426
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.075
	CRR073317	Gold flowering 3	0.231
	CRR073318	Tawny withering 1	1.373
	CRR073319	Tawny withering 2	2.701
	CRR073320	Tawny withering 3	1.086