Gene detail

Detail information of GWHGAAZE021454

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074907.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Sesamum indicum]
COG	YP_004775215.1	5E-52	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9FL28\|FLS2_ARATH	2E-101	LRR receptor-like serine/threonine-protein kinase FLS2 (Precursor)
trEMBL	tr\|A0A068TX96\|A0A068TX96_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313\|EMBL:CDP00866.1}
TAIR10	AT5G46330.1	3E-85	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	53580063	53586483	-
GWHAAZE00000006	mRNA	53580063	53586483	-
GWHAAZE00000006	exon	53585793	53586483	-
GWHAAZE00000006	exon	53583875	53584207	-
GWHAAZE00000006	exon	53581950	53583002	-
GWHAAZE00000006	exon	53580063	53580430	-
GWHAAZE00000006	CDS	53585793	53586483	-
GWHAAZE00000006	CDS	53583875	53584207	-
GWHAAZE00000006	CDS	53581950	53583002	-
GWHAAZE00000006	CDS	53580063	53580430	-

Transcript Sequence
>GWHTAAZE021478 ATGGCGAGAAATTCCCTCATTTTCTCGGTTTCATTGTTCATCTTGTTGAATTGCTTCACTCTTTGCTTATCCACTGACGATAAATCCTCTCTTCTAGCAATCAAAACGAACATCATCGACCGTACAGGCATTTTATCAAACTGGTCTGCAACCTCCAACGTGTCAATCTGTGCCTGGATTGGTGTCTTCTGTGATGGAAAAAACAACCAAAGGGTCACCGCTTTGAACCTCTCCGGCATGGGTCTCGCCGGAACCGTCTCTCCGGTCATCGGAAACCTCTCATCCCTCACTTCACTTGACTTCAGTTACAATAACTTGTCTGGTTCTTTGCCTAAAGAATTATCTCATTTGCAAATTCTTCGGCACTTGCTTTTGTTGAATAATAGCTTCACAGGTTCTGTACCTGCTGTCTTCTTCAACATTTCTTCATTGAGAGTACTTGATCTCTCAGCTAATGACTTGCATGGTACTCTTCCAGTGGAATATATGTGTAGTAGTTATGTTCCAAAACTTGAATTAATTTATCTCTTCTTGAATCGGTTCGAGGGAAAAATTCCGTCAAGTTTATACAAATGCAGGGAGCTTCAGTATCTATCATTGGCATACAATGAATTCAGTGGCAGCATACCCATTGAAATTGGCAACTTGACCAGGCTCAAGCACTTATATCTTGGCTTTAACAACTTGGAAGGTGAAATCCCGATGGAGATAGGTAATCTCAAACACTTGGAGCAATTAAACATACAAAGTACCTCTCTAAATGGACCTATTCCTAGTGTTATCTTTAACATGTCCTCTTTGAAAATGATCGATTTTCAAGAAAATAACCTATCTGGAAGCCTCCCAATGGACGTTCATTATGACCTCCCTGTTCTTCAGGAGCTCCATCTTGATAAAAATCAGCTTACGGGTCAAATCCCATCCCAGTTATGGGAATGTAGCGGACTTCAAATATTATCATTGGCCAAAAATAAATTCACAGGGATCATACCAAAGAAAGTTGGGAACCTTACATTGCTAAAAGGTACATTACCAAGTGAGATTGGTAAGCTTAATTTAGAAAGACTTTTTCTTGGTGAAAACAGCTTAACAGGCCTTATACCGTTTGAAATCTTTAATATCTCATTAATCACTGCCATTTCTTTGCAAATGAATCACTTCTCGGGCCTTCTTCCATCGAGCATGGGGCTTTGGATTCCCAATCTTGAAAAGCTTTATCTAGATAACAACAGGCTCAGTGGACCAATCCCAAACTCTATCTCGAATGCATCTAAGCTTACCATTATAGCGATGTCTAGCAACTCATTCAGTGGCTTTATACCCAACACACTTGGCAATTTAAGAGATTTAGAGTTGCTCTTGATTGCAGAAAATAATTTGACTGTGGAAGTTTCCACTCCGGAATTGAGATTCTTCAATTCTTTGACTAATTGCAAGAATTTAGAATTGTTATCGATAGCGCTAAATCAATTTAATGGAATCCTCCCAACTTCAATTGCTAATCTCTCAACTTCACTTCGTTTGTTTGAAGCATTTGGAAGCCAAATTAAGGGTGAAATTCCCATGGGAATAGGCAACTTGAGCAGCTTGACAAGCCTAGGTTTAGATAGCAATGAGTTGACAGGGTTCATCCCTTCAACACTTGGAAGACTGGAAAATCTAGAACGTATGTATCTTGAACACAACGAATTGCAAGGATCCATACCTAATGCTCTTTGTCAGTTAAATAGGATGGGAGACTTATATTTGAGTCATAATAAACTCGATGGACCTATATTGTCATGTTTAGGACAACTTAAATCCATGAGAAGGCTATTCTTAGATTCTAATCATTTGACTTCGACAATACCATCAACCTTATGGAGCCTCGAAGATCTCTTATATCTAAACTTGTCCACAAATTCTCTTACTGGCGATTTACCATTAGATGTTGGAAATCTAAAGATGATAACAGAAATGGACTTATCGTTGAATCAATTTTCGGGCGGTATCTCAAGCACCATCGGGAACTGCAGAATGCTAACATTTCTCTCATTTGCACATAATAAACTACAAGGACCTATTCCTCAATCATTGGAATATGGAAGCGAAGGAATAGTATCCACTCAAGCAGATGTCTACGGTTACGGTATTCTATTAATGGAAACATTCACAAGGAAGAGGCCAACAGATGAAATGTTTTCTGACAAAATGACCATGAGGAGTTGGGTTTCTGAAGCAGGATCACTCGGTTCAATGGTTCAAGTCGCAGACGCCAATTTAATAGAAAAAGAAGATGAAAAATTCTCTACCAAGAAGGAATGTGTGTCATCCATCTTATATTTGGCTATGGATTGTTCGAAAAATATTCCTATGGAGAGGATCAGCATGGAAGATGTTGTGGTTAGACTCAACAAAATAAAAACTATATTTCTATCTAGCATTGAAATGCGAAAACAGACGTAG

Network for GWHGAAZE021454

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	26	65	1.70E-07
PF00560.34	LRR_1	218	239	1.9
PF13855.7	LRR_8	242	302	6.20E-07
PF13855.7	LRR_8	400	460	1.40E-06
PF13855.7	LRR_8	529	588	7.60E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.039
	SRR3591706	second leaf	2.995
	SRR3591707	mature leaf	11.170
	SRR3591708	Shoot apex	0.254
	SRR3591709	Stem	0.142
	SRR3591710	White floral bud	0.027
	SRR3591711	White flower	0.090
	SRR3591712	Green floral bud	0.107
	SRR3591713	Yellow flower	0.016
SRP173429	SRR8316895	Juvenile bud stage	2.157
	SRR8316896	Juvenile bud stage	2.970
	SRR8316897	Juvenile bud stage	0.039
	SRR8316894	Third green stage	4.176
	SRR8316900	Third green stage	4.152
	SRR8316901	Third green stage	2.878
	SRR8316898	Complete white stage	0.247
	SRR8316899	Complete white stage	2.951
	SRR8316903	Complete white stage	0.585
	SRR8316902	Silver flowering stage	0.238
	SRR8316904	Silver flowering stage	0.774
	SRR8316905	Silver flowering stage	0.224
	SRR8316906	Gold flowering stage	0.213
	SRR8316907	Gold flowering stage	0.696
	SRR8316908	Gold flowering stage	0.058
SRP132670	SRR6706286	Control	2.427
	SRR6706287	Light intensity 50%	2.901
	SRR6706288	Light intensity 20%	2.975
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.972
	CNS0095593	Slightly white alabastrum(diploid) 2	1.790
	CNS0095594	Slightly white alabastrum(diploid) 3	1.792
	CNS0095595	Whole white alabastrum(diploid) 2	2.060
	CNS0095596	Whole white alabastrum(diploid) 3	1.485
	CNS0095597	Whole white alabastrum(diploid) 4	1.178
	CNS0095598	Silvery flower (diploied) 1	2.659
	CNS0095599	Silvery flower (diploied) 2	0.725
	CNS0095600	Silvery flower (diploied) 3	0.387
	CNS0095601	Golden flower (diploid) 1	0.390
	CNS0095602	Golden flower (diploid) 2	0.422
	CNS0095603	Golden flower (diploid) 3	0.478
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.139
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.250
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.542
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.193
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.087
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.204
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.052
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.148
	CRR073298	Stem 2	2.193
	CRR073299	Stem 3	0.878
	CRR073300	Leaf 1	1.152
	CRR073301	Leaf 2	1.843
	CRR073302	Leaf 3	0.733
	CRR073303	Juvenile bud 1	0.102
	CRR073304	Juvenile bud 2	0.008
	CRR073305	Juvenile bud 3	0.929
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.029
	CRR073309	Second white 1	0.054
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.066
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.379
	CRR073316	Gold flowering 2	2.488
	CRR073317	Gold flowering 3	0.990
	CRR073318	Tawny withering 1	0.083
	CRR073319	Tawny withering 2	0.254
	CRR073320	Tawny withering 3	0.160