Detail information of GWHGAAZE021192


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002266665.20PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD50 [Vitis vinifera]
Swissprottr|Q9SL02|RAD50_ARATH0DNA repair protein RAD50
trEMBLtr|A0A0A0L416|A0A0A0L416_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN56710.1}
TAIR10AT2G31970.10DNA repair-recombination protein (RAD50)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene3811509938129772-
GWHAAZE00000006mRNA3811509938129772-
GWHAAZE00000006exon3812965038129772-
GWHAAZE00000006exon3812656638126733-
GWHAAZE00000006exon3812402538124200-
GWHAAZE00000006exon3812242338122537-
GWHAAZE00000006exon3811969338119921-
GWHAAZE00000006exon3811827138118449-
GWHAAZE00000006exon3811800638118176-
GWHAAZE00000006exon3811679238116896-
GWHAAZE00000006exon3811659738116704-
GWHAAZE00000006exon3811628738116513-
GWHAAZE00000006exon3811571738115809-
GWHAAZE00000006exon3811509938115165-
GWHAAZE00000006CDS3812965038129772-
GWHAAZE00000006CDS3812656638126733-
GWHAAZE00000006CDS3812402538124200-
GWHAAZE00000006CDS3812242338122537-
GWHAAZE00000006CDS3811969338119921-
GWHAAZE00000006CDS3811827138118449-
GWHAAZE00000006CDS3811800638118176-
GWHAAZE00000006CDS3811679238116896-
GWHAAZE00000006CDS3811659738116704-
GWHAAZE00000006CDS3811628738116513-
GWHAAZE00000006CDS3811571738115809-
GWHAAZE00000006CDS3811509938115165-
Transcript Sequence

Network for GWHGAAZE021192

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13476.7AAA_237411.80E-08
PF13476.7AAA_23442166.70E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10866RAD50 Homologous recombination map03440
Non-homologous end-joiningmap03450
Cellular senescencemap04218

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.739
SRR3591706second leaf1.218
SRR3591707mature leaf1.149
SRR3591708Shoot apex2.394
SRR3591709Stem2.238
SRR3591710White floral bud3.215
SRR3591711White flower4.507
SRR3591712Green floral bud2.191
SRR3591713Yellow flower4.635
SRP173429 SRR8316895Juvenile bud stage 2.111
SRR8316896Juvenile bud stage 1.683
SRR8316897Juvenile bud stage 1.690
SRR8316894Third green stage 2.227
SRR8316900Third green stage 3.353
SRR8316901Third green stage 3.178
SRR8316898Complete white stage 1.559
SRR8316899Complete white stage 3.437
SRR8316903Complete white stage 3.807
SRR8316902Silver flowering stage2.091
SRR8316904Silver flowering stage5.011
SRR8316905Silver flowering stage2.113
SRR8316906Gold flowering stage 6.351
SRR8316907Gold flowering stage 4.432
SRR8316908Gold flowering stage 4.326
SRP132670SRR6706286Control3.744
SRR6706287Light intensity 50%3.616
SRR6706288Light intensity 20%3.942
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.455
CNS0095593Slightly white alabastrum(diploid) 20.295
CNS0095594Slightly white alabastrum(diploid) 31.071
CNS0095595Whole white alabastrum(diploid) 20.699
CNS0095596Whole white alabastrum(diploid) 30.788
CNS0095597Whole white alabastrum(diploid) 41.230
CNS0095598Silvery flower (diploied) 11.601
CNS0095599Silvery flower (diploied) 21.764
CNS0095600Silvery flower (diploied) 35.973
CNS0095601Golden flower (diploid) 12.592
CNS0095602Golden flower (diploid) 24.486
CNS0095603Golden flower (diploid) 34.172
CNS0095604Slightly white alabastrum(tetraploid) 10.961
CNS0095605Slightly white alabastrum(tetraploid) 20.127
CNS0095606Slightly white alabastrum(tetraploid) 32.954
CNS0095607Whole white alabastrum(tetraploid) 10.645
CNS0095608Whole white alabastrum(tetraploid) 20.660
CNS0095609Whole white alabastrum(tetraploid) 31.433
CNS0095610Silvery flower (tetraploid) 13.437
CNS0095611Silvery flower (tetraploid) 21.834
CNS0095612Silvery flower (tetraploid) 31.161
CNS0095613Golden flower (tetraploid) 10.777
CNS0095614Golden flower (tetraploid) 21.628
CNS0095615Golden flower (tetraploid) 31.357
CRA001975CRR073297Stem 13.052
CRR073298Stem 22.726
CRR073299Stem 32.981
CRR073300Leaf 14.179
CRR073301Leaf 23.116
CRR073302Leaf 32.164
CRR073303Juvenile bud 12.015
CRR073304Juvenile bud 21.374
CRR073305Juvenile bud 33.491
CRR073306Third green 12.267
CRR073307Third green 21.061
CRR073308Third green 32.497
CRR073309Second white 11.349
CRR073310Second white 22.225
CRR073311Second white 33.372
CRR073312Silver flowering 11.010
CRR073313Silver flowering 20.908
CRR073314Silver flowering 31.190
CRR073315Gold flowering 10.247
CRR073316Gold flowering 21.647
CRR073317Gold flowering 30.582
CRR073318Tawny withering 11.827
CRR073319Tawny withering 20.661
CRR073320Tawny withering 31.273