Detail information of GWHGAAZE021191


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009624299.11.8238E-114PREDICTED: DNA repair protein RAD50-like [Nicotiana tomentosiformis]
Swissprottr|Q9SL02|RAD50_ARATH5E-85DNA repair protein RAD50
trEMBLtr|A0A059ATC1|A0A059ATC1_EUCGR3E-112Uncharacterized protein {ECO:0000313|EMBL:KCW57212.1}
TAIR10AT2G31970.19E-71DNA repair-recombination protein (RAD50)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene3810082038103684-
GWHAAZE00000006mRNA3810082038103684-
GWHAAZE00000006exon3810354438103684-
GWHAAZE00000006exon3810289338103102-
GWHAAZE00000006exon3810146538101685-
GWHAAZE00000006exon3810082038100964-
GWHAAZE00000006CDS3810354438103684-
GWHAAZE00000006CDS3810289338103102-
GWHAAZE00000006CDS3810146538101685-
GWHAAZE00000006CDS3810082038100964-
Transcript Sequence

Network for GWHGAAZE021191

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04423.15Rad50_zn_hook21572.10E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10866RAD50 Homologous recombination map03440
Non-homologous end-joiningmap03450
Cellular senescencemap04218

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.147
SRR3591706second leaf1.518
SRR3591707mature leaf1.518
SRR3591708Shoot apex7.721
SRR3591709Stem6.591
SRR3591710White floral bud3.686
SRR3591711White flower8.762
SRR3591712Green floral bud3.045
SRR3591713Yellow flower3.184
SRP173429 SRR8316895Juvenile bud stage 1.823
SRR8316896Juvenile bud stage 2.488
SRR8316897Juvenile bud stage 2.563
SRR8316894Third green stage 1.263
SRR8316900Third green stage 3.360
SRR8316901Third green stage 3.156
SRR8316898Complete white stage 1.314
SRR8316899Complete white stage 3.363
SRR8316903Complete white stage 2.940
SRR8316902Silver flowering stage2.707
SRR8316904Silver flowering stage5.939
SRR8316905Silver flowering stage1.778
SRR8316906Gold flowering stage 3.550
SRR8316907Gold flowering stage 4.998
SRR8316908Gold flowering stage 4.431
SRP132670SRR6706286Control2.800
SRR6706287Light intensity 50%2.970
SRR6706288Light intensity 20%3.148
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.802
CNS0095593Slightly white alabastrum(diploid) 21.084
CNS0095594Slightly white alabastrum(diploid) 32.512
CNS0095595Whole white alabastrum(diploid) 20.849
CNS0095596Whole white alabastrum(diploid) 30.694
CNS0095597Whole white alabastrum(diploid) 41.209
CNS0095598Silvery flower (diploied) 11.950
CNS0095599Silvery flower (diploied) 24.111
CNS0095600Silvery flower (diploied) 34.830
CNS0095601Golden flower (diploid) 11.577
CNS0095602Golden flower (diploid) 23.425
CNS0095603Golden flower (diploid) 33.212
CNS0095604Slightly white alabastrum(tetraploid) 11.211
CNS0095605Slightly white alabastrum(tetraploid) 22.539
CNS0095606Slightly white alabastrum(tetraploid) 35.101
CNS0095607Whole white alabastrum(tetraploid) 11.913
CNS0095608Whole white alabastrum(tetraploid) 20.402
CNS0095609Whole white alabastrum(tetraploid) 34.475
CNS0095610Silvery flower (tetraploid) 15.350
CNS0095611Silvery flower (tetraploid) 25.239
CNS0095612Silvery flower (tetraploid) 35.909
CNS0095613Golden flower (tetraploid) 12.564
CNS0095614Golden flower (tetraploid) 23.822
CNS0095615Golden flower (tetraploid) 32.002
CRA001975CRR073297Stem 14.481
CRR073298Stem 27.072
CRR073299Stem 34.394
CRR073300Leaf 16.280
CRR073301Leaf 23.470
CRR073302Leaf 32.343
CRR073303Juvenile bud 13.588
CRR073304Juvenile bud 22.384
CRR073305Juvenile bud 34.591
CRR073306Third green 12.814
CRR073307Third green 22.819
CRR073308Third green 32.392
CRR073309Second white 14.192
CRR073310Second white 25.469
CRR073311Second white 35.093
CRR073312Silver flowering 12.338
CRR073313Silver flowering 21.570
CRR073314Silver flowering 30.805
CRR073315Gold flowering 11.011
CRR073316Gold flowering 21.740
CRR073317Gold flowering 30.349
CRR073318Tawny withering 15.184
CRR073319Tawny withering 25.098
CRR073320Tawny withering 32.573