Detail information of GWHGAAZE021181


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002321105.10DNA topoisomerase family protein [Populus trichocarpa]
COGYP_008432516.14E-37hypothetical protein N186_05815
Swissprottr|F4ISQ7|TOP3B_ARATH0DNA topoisomerase 3-beta
trEMBLtr|B9IAB5|B9IAB5_POPTR0DNA topoisomerase family protein {ECO:0000313|EMBL:EEE99420.1}
TAIR10AT2G32000.15E-151DNA topoisomerase, type IA, core

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene3772217137732491-
GWHAAZE00000006mRNA3772217137732491-
GWHAAZE00000006exon3772217137722530-
GWHAAZE00000006exon3772481737724967-
GWHAAZE00000006exon3772650837726725-
GWHAAZE00000006exon3772841837728546-
GWHAAZE00000006exon3772935137729519-
GWHAAZE00000006exon3773197437732198-
GWHAAZE00000006exon3773247837732491-
GWHAAZE00000006CDS3773247837732491-
GWHAAZE00000006CDS3773197437732198-
GWHAAZE00000006CDS3772935137729519-
GWHAAZE00000006CDS3772841837728546-
GWHAAZE00000006CDS3772650837726725-
GWHAAZE00000006CDS3772481737724967-
GWHAAZE00000006CDS3772217137722530-
Transcript Sequence

Network for GWHGAAZE021181

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01131.21Topoisom_bac782334.30E-37
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03165TOP3 Homologous recombination map03440
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName
GO:0006265biological_processDNA topological change
GO:0003677molecular_functionDNA binding
GO:0003916molecular_functionDNA topoisomerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.488
SRR3591706second leaf1.518
SRR3591707mature leaf1.138
SRR3591708Shoot apex2.694
SRR3591709Stem2.024
SRR3591710White floral bud2.334
SRR3591711White flower1.912
SRR3591712Green floral bud2.962
SRR3591713Yellow flower1.373
SRP173429 SRR8316895Juvenile bud stage 1.145
SRR8316896Juvenile bud stage 1.758
SRR8316897Juvenile bud stage 0.824
SRR8316894Third green stage 0.405
SRR8316900Third green stage 1.440
SRR8316901Third green stage 1.116
SRR8316898Complete white stage 0.233
SRR8316899Complete white stage 1.656
SRR8316903Complete white stage 0.608
SRR8316902Silver flowering stage0.334
SRR8316904Silver flowering stage0.168
SRR8316905Silver flowering stage0.269
SRR8316906Gold flowering stage 0.652
SRR8316907Gold flowering stage 0.125
SRR8316908Gold flowering stage 0.833
SRP132670SRR6706286Control0.029
SRR6706287Light intensity 50%0.132
SRR6706288Light intensity 20%0.076
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.054
CNS0095593Slightly white alabastrum(diploid) 20.919
CNS0095594Slightly white alabastrum(diploid) 30.206
CNS0095595Whole white alabastrum(diploid) 20.353
CNS0095596Whole white alabastrum(diploid) 30.137
CNS0095597Whole white alabastrum(diploid) 40.558
CNS0095598Silvery flower (diploied) 10.902
CNS0095599Silvery flower (diploied) 20.905
CNS0095600Silvery flower (diploied) 31.055
CNS0095601Golden flower (diploid) 11.185
CNS0095602Golden flower (diploid) 20.971
CNS0095603Golden flower (diploid) 31.349
CNS0095604Slightly white alabastrum(tetraploid) 11.138
CNS0095605Slightly white alabastrum(tetraploid) 21.059
CNS0095606Slightly white alabastrum(tetraploid) 32.802
CNS0095607Whole white alabastrum(tetraploid) 11.053
CNS0095608Whole white alabastrum(tetraploid) 20.151
CNS0095609Whole white alabastrum(tetraploid) 32.238
CNS0095610Silvery flower (tetraploid) 10.779
CNS0095611Silvery flower (tetraploid) 20.550
CNS0095612Silvery flower (tetraploid) 31.744
CNS0095613Golden flower (tetraploid) 10.654
CNS0095614Golden flower (tetraploid) 21.276
CNS0095615Golden flower (tetraploid) 30.461
CRA001975CRR073297Stem 10.637
CRR073298Stem 20.589
CRR073299Stem 30.767
CRR073300Leaf 10.352
CRR073301Leaf 20.598
CRR073302Leaf 30.197
CRR073303Juvenile bud 10.509
CRR073304Juvenile bud 20.573
CRR073305Juvenile bud 30.567
CRR073306Third green 10.122
CRR073307Third green 20.336
CRR073308Third green 30.062
CRR073309Second white 10.572
CRR073310Second white 20.372
CRR073311Second white 30.062
CRR073312Silver flowering 10.411
CRR073313Silver flowering 20.432
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.164
CRR073316Gold flowering 20.550
CRR073317Gold flowering 30.078
CRR073318Tawny withering 10.665
CRR073319Tawny withering 20.687
CRR073320Tawny withering 30.723