Gene detail

Detail information of GWHGAAZE021165

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU31524.1	0	hypothetical protein MIMGU_mgv1a001083mg [Erythranthe guttata]
COG	YP_004775215.1	2E-34	RHS repeat-associated core domain-containing protein
Swissprot	tr\|P43298\|TMK1_ARATH	3E-146	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|A0A022QVD5\|A0A022QVD5_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU31524.1}
TAIR10	AT3G23750.1	4E-120	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	36723809	36726509	-
GWHAAZE00000006	mRNA	36723809	36726509	-
GWHAAZE00000006	exon	36723809	36724243	-
GWHAAZE00000006	exon	36724668	36726509	-
GWHAAZE00000006	CDS	36724668	36726509	-
GWHAAZE00000006	CDS	36723809	36724243	-

Transcript Sequence
>GWHTAAZE021189 ATGTCCACTCTCAAAACCCTATATTCTCTCTTTTTCATCCTCCTCGCGTCCCTTTCTTTCTCAACTGCAGATGATCTCTCCGTACTCCAAAAACTCGCCACCAACCTCGGCGGAACAGCGCCCAAAGACTGGACGGGCGCAGACATCTGCAGCGCCTGGTCCGGGATCGACTGTGACAACTCTGGCCGAGTCACCTCTATCAACCTCCGCTCCAAAAACCTCCAAGGTACACTCCCCACTGAGCTCAACAACCTCTCTCAGCTCAAAACCCTAGCTCTCCAGCAAAACTCCCTCAATGGCGCTTTACCTTCCTTCGCCAACATGACTACGCTAGAACATATTTTTCTTTATAGTAATGATTTTAGTTCTGTTCCGTCTGATTTCCTTGTGGGTCTCACCAATTTACAGTTATTTAGTATAAGTCATAATCCGAGTTTAAAATCTTGGGAGGTGCCGATTCAGTTGAGGGATAGTAGTAGTTTGAGAACTTTATCGGCGCGTAATGCGAGTTTGGTTGGAAGTATTCCGGATATTTTCGGGTCTTTCCCCAATTTGCAGAGTCTCAGATTGTCGTACAATAATTTAATTGGTGTGTTGCCTAAATCTTTGGGTGGTTCCGTGATTCAGAATCTTTGGATCAATAATCAGGCTCAGGGATTATCGGGTCCGATTGATGTGTTGTCTTCGATGACACAGCTTTACCAAGTTTGGCTTCATGCTAATGCTTTTACGGGTCCGATCCCGGACCTTTCGAACTGCCAGAATCTGTTTGATTTGCAGCTAAGAGATAATCAGTTTACGGGTGTTGTACCACCGGTGATTATGAATCTGCCGAAATTGGCTAATATATCTTTGCAGAATAATAAGTTGCAGGGTCCATTGCCCGTGTTTAAATCCGGGGTTAAGAACTCGCTTGGTAGTGCTAATAGCTTTTGTCTGAGTACTCTGGGTCCTTGTGATCCGCAGGTTACGGTTCTTCTTGAAGTTGCCGGTGCCATTGGGTATCCGATGAATTTGGCTGAATCTTGGCAAGGGAATGATGCTTGCCAAAGATGGACATTTATTTCCTGTGATTCGTCGGGGAAATATGTGACCACTGTTAATTTTGGTAAGCAGCAGTATGTGGGTACAATCTCGCCTTCCTTTGCGAATTTAACTTCGTTGAGGAGTTTGTCATTGAATGATAATCATTTAACGGGTTCGATTCCGAATAGCTTGACGACTTTGACACAGCTTCAAACGCTTGATGTTTCTAATAATAATCTAAGTGGGCCTATACCTGTTTTTCCGCCAAGTGTGAAGTTTACATCAAGTGAGAATTTGTTACTGGGACAAAATATTAGTACTGGTGATGGAGGAGGTGTTGGAAGACCTCCATCTTCAGATAGAAACAATTCGTCTGGAGGTCGAGGCGGATCATCTAAAAGGCCTTCAGTTTCGGCTGGTATGATTGCTGGTGTAGTTGTTGCTGTGTTGGTTTTCATTGGGGTAATAATCTTTGTGTCCTACAAGTGCTATGTTAAGAGGCGCCACCAGAGATTAAGGAGAGTGGCAGGTCCCGAAAATGGGAACGAAATGGCGAAAAATAGCGTAATGCGTTGTGGCGATCACAGTGAGATACCGGTTTTCAAAGGTGGGAATGTGGTGATTTCGATTCAAGTGCTTCGACAAGTGACCAACAATTTTAGTGAAGACAATATCTTGGGTAGAGGTGGATTTGGAGTCGTTTATAAAGGAGAATTGCAAGATGGGACCAAGATCGCAGTGAAGAGGATGGAGACTGGGGTAATGGGTACGGAAGGAATGAAGCAGTTTCAAGCCGAAATTGCCATTCTTACGAAAACATGTCTTAATTGTATATCAAAATTGCTAAGATTTTTATTTGAACTTATCATTTTCATGTTCTTTATGGTACGTACACAAGCTAATACCAGAAGGGTGACCGCGAAAGTGGACGTATACGCATTCGGAGTCGTGTTAATGGAAATAATAACAGGTCGAAAAGCACTAGACAAGACCATGCCGGAGGAGTGTTCCCACTTAGAGACATGGTTCCGAAGAGTCTTTACAAACAAGGACAGCATTAGAAATGCCATTGACACCACACTCGATCGCGATGAGGAAACCTTTGATAGCATTTGCAAGGTAGTCAAGCTAGCCTGTCATTGCACCACTTGCAAGCCGCTCCAAAGACCCGACATGGGCCATGTGGTTAACGTGTTGCGTTCACTAGTTGAGCAATGGAATCCCTCTCAACTCGAAGAAACCTTCATATGA

Network for GWHGAAZE021165

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	23	59	0.025
PF00560.34	LRR_1	184	204	0.72
PF08263.13	LRRNT_2	320	358	0.02
PF12799.8	LRR_4	386	427	8.40E-07

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-IX

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.114
	SRR3591706	second leaf	0.078
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.084
	SRR3591709	Stem	0.122
	SRR3591710	White floral bud	0.117
	SRR3591711	White flower	0.165
	SRR3591712	Green floral bud	0.081
	SRR3591713	Yellow flower	0.078
SRP173429	SRR8316895	Juvenile bud stage	0.029
	SRR8316896	Juvenile bud stage	0.120
	SRR8316897	Juvenile bud stage	0.064
	SRR8316894	Third green stage	0.015
	SRR8316900	Third green stage	0.019
	SRR8316901	Third green stage	0.108
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.086
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.052
	SRR8316904	Silver flowering stage	0.063
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.153
	SRR8316907	Gold flowering stage	0.007
	SRR8316908	Gold flowering stage	0.120
SRP132670	SRR6706286	Control	0.029
	SRR6706287	Light intensity 50%	0.042
	SRR6706288	Light intensity 20%	0.072
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.044
	CNS0095593	Slightly white alabastrum(diploid) 2	0.212
	CNS0095594	Slightly white alabastrum(diploid) 3	0.069
	CNS0095595	Whole white alabastrum(diploid) 2	0.019
	CNS0095596	Whole white alabastrum(diploid) 3	0.103
	CNS0095597	Whole white alabastrum(diploid) 4	0.016
	CNS0095598	Silvery flower (diploied) 1	0.097
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.128
	CNS0095601	Golden flower (diploid) 1	0.174
	CNS0095602	Golden flower (diploid) 2	0.133
	CNS0095603	Golden flower (diploid) 3	0.141
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.139
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.050
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.432
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.020
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.215
	CNS0095610	Silvery flower (tetraploid) 1	0.028
	CNS0095611	Silvery flower (tetraploid) 2	0.060
	CNS0095612	Silvery flower (tetraploid) 3	0.150
	CNS0095613	Golden flower (tetraploid) 1	0.176
	CNS0095614	Golden flower (tetraploid) 2	0.077
	CNS0095615	Golden flower (tetraploid) 3	0.289
CRA001975	CRR073297	Stem 1	0.014
	CRR073298	Stem 2	0.045
	CRR073299	Stem 3	0.062
	CRR073300	Leaf 1	0.098
	CRR073301	Leaf 2	0.081
	CRR073302	Leaf 3	0.036
	CRR073303	Juvenile bud 1	0.003
	CRR073304	Juvenile bud 2	0.080
	CRR073305	Juvenile bud 3	0.031
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.021
	CRR073308	Third green 3	0.009
	CRR073309	Second white 1	0.031
	CRR073310	Second white 2	0.031
	CRR073311	Second white 3	0.047
	CRR073312	Silver flowering 1	0.005
	CRR073313	Silver flowering 2	0.061
	CRR073314	Silver flowering 3	0.100
	CRR073315	Gold flowering 1	0.081
	CRR073316	Gold flowering 2	0.746
	CRR073317	Gold flowering 3	0.091
	CRR073318	Tawny withering 1	2.066
	CRR073319	Tawny withering 2	1.995
	CRR073320	Tawny withering 3	0.363