Detail information of GWHGAAZE021085


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009800255.14.70852E-44PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Nicotiana sylvestris]
COGYP_007149233.12E-12TIGR03032 family protein
Swissprottr|Q9M8Y0|SEC_ARATH3E-37Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
trEMBLtr|M1BAC0|M1BAC0_SOLTU7E-43Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400040740}
TAIR10AT3G04240.12E-32Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene3472972734731083-
GWHAAZE00000006mRNA3472972734731083-
GWHAAZE00000006exon3472972734729840-
GWHAAZE00000006exon3473096434731083-
GWHAAZE00000006CDS3473096434731083-
GWHAAZE00000006CDS3472972734729840-
Transcript Sequence

Network for GWHGAAZE021085

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K09667OGT Other types of O-glycan biosynthesis map00514

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf219.400
SRR3591706second leaf105.733
SRR3591707mature leaf142.966
SRR3591708Shoot apex189.581
SRR3591709Stem292.480
SRR3591710White floral bud243.624
SRR3591711White flower278.227
SRR3591712Green floral bud230.094
SRR3591713Yellow flower266.657
SRP173429 SRR8316895Juvenile bud stage 104.717
SRR8316896Juvenile bud stage 181.821
SRR8316897Juvenile bud stage 91.486
SRR8316894Third green stage 70.014
SRR8316900Third green stage 191.284
SRR8316901Third green stage 202.051
SRR8316898Complete white stage 125.726
SRR8316899Complete white stage 280.657
SRR8316903Complete white stage 170.116
SRR8316902Silver flowering stage115.994
SRR8316904Silver flowering stage137.051
SRR8316905Silver flowering stage59.069
SRR8316906Gold flowering stage 191.657
SRR8316907Gold flowering stage 226.349
SRR8316908Gold flowering stage 213.611
SRP132670SRR6706286Control240.519
SRR6706287Light intensity 50%247.309
SRR6706288Light intensity 20%247.588
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1187.061
CNS0095593Slightly white alabastrum(diploid) 2210.206
CNS0095594Slightly white alabastrum(diploid) 3192.965
CNS0095595Whole white alabastrum(diploid) 2173.107
CNS0095596Whole white alabastrum(diploid) 3183.226
CNS0095597Whole white alabastrum(diploid) 4165.424
CNS0095598Silvery flower (diploied) 1218.873
CNS0095599Silvery flower (diploied) 2230.147
CNS0095600Silvery flower (diploied) 3245.146
CNS0095601Golden flower (diploid) 1234.363
CNS0095602Golden flower (diploid) 2233.113
CNS0095603Golden flower (diploid) 3222.513
CNS0095604Slightly white alabastrum(tetraploid) 1161.341
CNS0095605Slightly white alabastrum(tetraploid) 2145.297
CNS0095606Slightly white alabastrum(tetraploid) 3162.477
CNS0095607Whole white alabastrum(tetraploid) 1139.822
CNS0095608Whole white alabastrum(tetraploid) 2152.178
CNS0095609Whole white alabastrum(tetraploid) 3137.617
CNS0095610Silvery flower (tetraploid) 1213.677
CNS0095611Silvery flower (tetraploid) 2179.046
CNS0095612Silvery flower (tetraploid) 3190.350
CNS0095613Golden flower (tetraploid) 1211.213
CNS0095614Golden flower (tetraploid) 2196.592
CNS0095615Golden flower (tetraploid) 3243.179
CRA001975CRR073297Stem 1258.159
CRR073298Stem 2247.903
CRR073299Stem 3252.076
CRR073300Leaf 1271.073
CRR073301Leaf 2304.132
CRR073302Leaf 3236.031
CRR073303Juvenile bud 1343.735
CRR073304Juvenile bud 2221.410
CRR073305Juvenile bud 3381.508
CRR073306Third green 1209.859
CRR073307Third green 2194.137
CRR073308Third green 3233.678
CRR073309Second white 1188.161
CRR073310Second white 2207.992
CRR073311Second white 3168.803
CRR073312Silver flowering 1210.010
CRR073313Silver flowering 2210.290
CRR073314Silver flowering 3208.736
CRR073315Gold flowering 1163.188
CRR073316Gold flowering 2182.398
CRR073317Gold flowering 3124.594
CRR073318Tawny withering 1314.944
CRR073319Tawny withering 2389.541
CRR073320Tawny withering 3279.692