Gene detail

Detail information of GWHGAAZE021045

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	1.1788E-112	unnamed protein product [Coffea canephora]
COG	YP_001958461.1	5E-27	hypothetical protein Aasi_1443
Swissprot	tr\|Q9FID8\|Y5900_ARATH	3E-102	Putative receptor-like protein kinase At5g39000 (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	4E-113	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT5G39000.1	2E-89	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	33098034	33099251	-
GWHAAZE00000006	mRNA	33098034	33099251	-
GWHAAZE00000006	exon	33098034	33099251	-
GWHAAZE00000006	CDS	33098034	33099251	-

Transcript Sequence
>GWHTAAZE021069 ATGTCACATTACAAACTGGGCAAAAGAGCCGACAAGATAACTCAAGATATAATTGAGCTCCTAAGCGAGGGACGGTTTGATAGAGTTTCTTACCCTGCACCACCGTCATTGATAGAATGTATAGCTCCGGCAGTGGCAGAAACTCTGGTCTTTGAGGATCAAGGAGGTGGACTATCAGATGCAGCATATGCACTACTACAACTATGCCGTTGCTTTACATTTGCTGAGATCCAGTCGGCAACCCAGAACTTTAATGATAAACTTCTCATAGGGAAGGGTGGATTTGGAAGAGTTTACAAAGGGTTTGTCAACAATGGAGCAACTGCAGTTGCCATAAAACGGCTGGATCCCAAGTCCAGCCAAGGAGGAATCGAGTTCCACACGGAAATTCAGATGCTTTCTAGATTTCGACACTGCAATCTCGTGTCTCTTATTGGATATTGCCACGAAGGTCGTGAAATGATCCTAATTTATGAGTATATGCCCAACGGAAGTATGGCCGATCATTTGCACCCAAAAGATGGTAGTAGAAATGCTAATAGCTCTAATTTATCATGGGTAAAACGTCTCATTATATGCATAGGGGCAGCTCGTGGGATAGACTACCTACATACTGGCACGGGTGTTTTAGAAAGAGTCATACATCGGGACATTAAAACCTCAAACATCCTCTTGGATGCCAATTGGGCAGGTAAGGTTTCTGACTTTGGGTTGTGCAAATTAGGTCCAGCAAACCAGTCACGCACCCATATCAGCACCCGCGTTAAAGGAACCCCTGGCTATTGTGATCCAGAGTATTTATTGACCCATCGGTTGACAAAGAAATCCGATGTCTATGCCTTCGGGGTGGTACTATTTGAAGTGCTATCTGGTAAACCAGCACTAGATTTCAGCCTTCCTCTGGACCAAAGGAGTCTAGCAAAACGGGCCCAACAAGGCATCCAAGAAAATACCACACATCGGCTTATCGACCCAAATTTGAAGTGGGAAATCTCTTCAAATTCTTTGGAAGCGTTTGTGGATATTGCAGGTTGGTGCTTGCAGAATGATTCAAAGAAACGACCTAGAATGGTTGAGGTTGTGGCATCGCTTGAGTTGGCATTGACATTGCAGAGTAGCAAGGACTCTGCAATTCTTGATGACGATATCTTTGATTTTGGTGGGACTTCTCACGACGAAGAAAGGGTACAGTCAGAGGTTATCAATGCTGGTAAGTGA

Network for GWHGAAZE021045

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	86	362	1.50E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.925
	SRR3591706	second leaf	1.109
	SRR3591707	mature leaf	4.672
	SRR3591708	Shoot apex	0.451
	SRR3591709	Stem	1.046
	SRR3591710	White floral bud	2.991
	SRR3591711	White flower	3.889
	SRR3591712	Green floral bud	5.711
	SRR3591713	Yellow flower	2.593
SRP173429	SRR8316895	Juvenile bud stage	5.452
	SRR8316896	Juvenile bud stage	6.042
	SRR8316897	Juvenile bud stage	2.235
	SRR8316894	Third green stage	3.437
	SRR8316900	Third green stage	9.270
	SRR8316901	Third green stage	11.057
	SRR8316898	Complete white stage	4.751
	SRR8316899	Complete white stage	19.282
	SRR8316903	Complete white stage	8.142
	SRR8316902	Silver flowering stage	7.825
	SRR8316904	Silver flowering stage	11.762
	SRR8316905	Silver flowering stage	6.316
	SRR8316906	Gold flowering stage	25.208
	SRR8316907	Gold flowering stage	23.260
	SRR8316908	Gold flowering stage	21.879
SRP132670	SRR6706286	Control	11.592
	SRR6706287	Light intensity 50%	10.925
	SRR6706288	Light intensity 20%	10.720
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.314
	CNS0095593	Slightly white alabastrum(diploid) 2	2.957
	CNS0095594	Slightly white alabastrum(diploid) 3	4.820
	CNS0095595	Whole white alabastrum(diploid) 2	3.187
	CNS0095596	Whole white alabastrum(diploid) 3	4.062
	CNS0095597	Whole white alabastrum(diploid) 4	4.364
	CNS0095598	Silvery flower (diploied) 1	10.863
	CNS0095599	Silvery flower (diploied) 2	7.272
	CNS0095600	Silvery flower (diploied) 3	14.959
	CNS0095601	Golden flower (diploid) 1	9.493
	CNS0095602	Golden flower (diploid) 2	14.978
	CNS0095603	Golden flower (diploid) 3	14.966
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.284
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.804
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.851
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.173
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.789
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.231
	CNS0095610	Silvery flower (tetraploid) 1	2.624
	CNS0095611	Silvery flower (tetraploid) 2	3.760
	CNS0095612	Silvery flower (tetraploid) 3	3.525
	CNS0095613	Golden flower (tetraploid) 1	0.621
	CNS0095614	Golden flower (tetraploid) 2	2.087
	CNS0095615	Golden flower (tetraploid) 3	1.552
CRA001975	CRR073297	Stem 1	11.439
	CRR073298	Stem 2	12.269
	CRR073299	Stem 3	9.046
	CRR073300	Leaf 1	13.200
	CRR073301	Leaf 2	12.774
	CRR073302	Leaf 3	12.811
	CRR073303	Juvenile bud 1	7.771
	CRR073304	Juvenile bud 2	10.883
	CRR073305	Juvenile bud 3	12.049
	CRR073306	Third green 1	13.549
	CRR073307	Third green 2	8.475
	CRR073308	Third green 3	13.066
	CRR073309	Second white 1	24.434
	CRR073310	Second white 2	33.037
	CRR073311	Second white 3	40.057
	CRR073312	Silver flowering 1	27.511
	CRR073313	Silver flowering 2	26.685
	CRR073314	Silver flowering 3	20.433
	CRR073315	Gold flowering 1	17.694
	CRR073316	Gold flowering 2	24.630
	CRR073317	Gold flowering 3	16.881
	CRR073318	Tawny withering 1	18.388
	CRR073319	Tawny withering 2	11.911
	CRR073320	Tawny withering 3	9.560