Gene detail

Detail information of GWHGAAZE021038

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	7.8904E-116	unnamed protein product [Coffea canephora]
COG	YP_008151634.1	3E-28	hypothetical protein SCE1572_26190
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	1E-103	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	3E-116	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT3G51550.1	3E-87	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	32955845	32976418	+
GWHAAZE00000006	mRNA	32955845	32976418	+
GWHAAZE00000006	exon	32955845	32955898	+
GWHAAZE00000006	exon	32962171	32962300	+
GWHAAZE00000006	exon	32963175	32963298	+
GWHAAZE00000006	exon	32963622	32963670	+
GWHAAZE00000006	exon	32964133	32964203	+
GWHAAZE00000006	exon	32966019	32966138	+
GWHAAZE00000006	exon	32966549	32966628	+
GWHAAZE00000006	exon	32967282	32967327	+
GWHAAZE00000006	exon	32968923	32968979	+
GWHAAZE00000006	exon	32973147	32974465	+
GWHAAZE00000006	exon	32974801	32975148	+
GWHAAZE00000006	exon	32975706	32975842	+
GWHAAZE00000006	exon	32975926	32976038	+
GWHAAZE00000006	exon	32976145	32976187	+
GWHAAZE00000006	exon	32976276	32976418	+
GWHAAZE00000006	five_prime_UTR	32955845	32955855	+
GWHAAZE00000006	CDS	32955856	32955898	+
GWHAAZE00000006	CDS	32962171	32962300	+
GWHAAZE00000006	CDS	32963175	32963298	+
GWHAAZE00000006	CDS	32963622	32963670	+
GWHAAZE00000006	CDS	32964133	32964203	+
GWHAAZE00000006	CDS	32966019	32966138	+
GWHAAZE00000006	CDS	32966549	32966628	+
GWHAAZE00000006	CDS	32967282	32967327	+
GWHAAZE00000006	CDS	32968923	32968979	+
GWHAAZE00000006	CDS	32973147	32974465	+
GWHAAZE00000006	CDS	32974801	32975148	+
GWHAAZE00000006	CDS	32975706	32975842	+
GWHAAZE00000006	CDS	32975926	32976038	+
GWHAAZE00000006	CDS	32976145	32976187	+
GWHAAZE00000006	CDS	32976276	32976379	+
GWHAAZE00000006	three_prime_UTR	32976380	32976418	+

Transcript Sequence
>GWHTAAZE021062 TATAGGGCAAAATGAAGGGATTGAAAAAACCTCCGTGGCAGAAGATGCCTCGAGGGAGGATACACTTGGAGGTCCCGCTTCAAACTTTGTCCAATATAACGGCAAACATGATATATGAAGAGCGGATCAATGAAAACATTCTTCACGCTCCCACGCTGATCGGTTGCTTCTTACGCTTTAGAAGTTTCTTCCTTTTCCTCGACATCATTCTCCCCATCAATAAATTTTATTTTATTTTTTTTAAAAAGAGAAGAAGTGGAGCTCTAGTTTTGTTAGTTGTGGAGAAGGGTAGTCCAAAATCACCAGTGGGAAAACAATTCAGAGTTATGGCAAATAATGGGAAGAGAATCACATGTGAACCAGATATGCAGCAGGAAATTGACAGATACATTTCTGAAGGCCCAGCCACGTTCAATGTTCTGTTCTTGCCAGATTCTCATGGCGGCGTTGTGCCAACAACTCTCGTTTTGGAAAAGTCACGCTACCTTTTTAGGATCTACGGACCACCAGCTACTGAAATTTCGAAGAAATTATGTGATGTTACTTCGATCGAAATTCCTCTTGGGCGCTCTGCAGATTTTCTATTAAGATGTTCCGATGGTTCTTCTCATTCTTTTAAGACTGGCGGAATACGTGATATGATTGTATTGACGATGAGATGTTTCAAGAGCAAGTGGGTCCGTTATCTCGGGGATAACACAAAAAATTTCCTTGAGGGAAGTACATTGAGGTATCATCTATCAATCCACACCAGCATGTTGCTTTATCCAGGATTTACCTCAAGTTTTGTTCCTTTCCCTCTCTTAATTCCCTCTCATGACATAGACTTTGTTCATAAAATCGTCCCTTCGGTCGTTCTCTTAACCGTAATCACTCTAAGCTTCATCATTCCTCGTAACCTAAGCTTTATTCGACGTGGAGAGAAATTCAACTCCCGGGCGGCAGACCAATTTTGCCGTCAGTTTACGTTTGCAGAGATCCAAGCAGCCACTTGCAATTTTTCCCATGGATTTGTAATCGGAAAAGGCGGATTTGGTAAGGTTTACAAAGGTATCCTGGACAACGGAGCTACTGCGGTTGCTATAAAGCGATTGGATCCCATGTCCAAACAAGGGGATAAGGAATTTACCACTGAGATAGAAGTGCTTTCTAAAATTCAACACAGTCATGTTGTTTCTCTTCTTGGTTACTGCGATGGCAATGACGAAATGATCCTTGTTTATAAATACATGGAAAATGGAAGCTTGGCTGATCATCTTTACAAAGAAAAAGTAAGAAATGGTAGTAATTCTAATATGTCGTGGGTAAAACGTGTTAAGATCTGTATAGGAGCAGCTCGAGGATTAGATTATCTTCACACTGGCACAGGTATATTGCATAGGGTTATACACCGTGATGTGAAGACTTCAAATATCTTATTGGATGAAAATTGGGCAGCTAAAATATCTGACTTTGGGTTGTCCAAAACAGGACCGGCAAATCAATCATTGACCCATGTTAGTACCCGTGTTAAAGGAACTCCAGGTTATTGCGATCCGGAGTATTTCTTGACTCGTCGTTTAACTAGAAAATCAGATGTTTATTCTTTTGGAGTAGTGTTGTTCGAAGTGTTGTCTGGAAGGCCGGCATTTGATTATAAACTGCCTAAGGAGCAAATAAGCCTAGTGCTATGGGCCCAAGACTGCATCCAAGAAGAAAAAACTCACTTGCTTATAGATCCCAATTTGAACTGGGAAATTTTTGAGAATTCTTTGAAGGCTTTTGTAAATATTGCTAGTCAGTGCTTGCATAGTCGTTCGAAAAAACGACCTACCATGAGTGAGGTTGTGGCCTCACTTGAGGTTGCATTGGCATTTCAGGAGAAGAAGGATTCTTCTTTACTTGATGAAGATATTTTTGATTTTGGTGAGACTTATGACGACCGAGAGGTAGTGGGCTCTTCTCGTTTACACTCGGATAATGTATATACAGATTCTTCAACTACGCTCGTGTCATTATCCCACTATCCACCCGCAGGGCCTTGTGAAGGAATTGAAAAACCCTCTTTGAGGGAGGATACACTCGGAAGCTCTGCTTCTGAAAGCTTGTCCAAATTAAAGGGGAACATGACATGTGAAGAGCAGATCAATGACAACATTTTGGTGAGTGAGGTTGCGTCCTCGCTTCAGGTTGCACCAGCATTACAGGAGAAGAAGGATTCTTCTGTACTTGATGATGAGGTTTATGATTTTGGTGAGTCTTTTGACAACCGAGAGGCAGAGGGCTCTTCTACAGTATTGTCGGATATTGCATATATGGATTCTTCAAGTTCAACCGTTCTCAAGCCATTACCTCCCAACTCGCCTATAGGGCAAAATGAAGGGATTGAAAAAACCTCCGTGGCAAAAGATACCTCGAGGGAGGATACACTTGGAGGTCCTGCTTCTGAAACTTTATCCAATATAACAGCGAACATGATATATGAAGAGCAGATCAATGAAAACATTCTTCACGCTCCCACAATCGCTGATCGGACTGCTTCTTCTGCTTTAGAAGTAGAAGAGGGCCCTGGCATAGAAGGGGTTCGAATCAATGGGGATGCAAAACTAGGAGCGGAACTTATAGCTTGTCCATATCCTATACGCGAAACTTCTCTGTGTATTTTTCAGTGGCTCCGTTATCTTGAGGATAACACAAAAAAGTACATTGAGGGAGCAACAAATCCAGAATATATAGTAACAGCTGATGATGTTGATACAATTATTGCCATCGAGTGCGTAGCCATGTATCACAAAGGGCGTCCGGTAGTTCATTAACTTCATTCTATACATTGTTTATCAACATTTTTTGTATAA

Network for GWHGAAZE021038

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	335	609	8.80E-51

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.016
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.226
	SRR3591711	White flower	0.075
	SRR3591712	Green floral bud	0.032
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.015
	SRR8316896	Juvenile bud stage	0.006
	SRR8316897	Juvenile bud stage	0.037
	SRR8316894	Third green stage	0.009
	SRR8316900	Third green stage	0.008
	SRR8316901	Third green stage	0.019
	SRR8316898	Complete white stage	0.039
	SRR8316899	Complete white stage	0.026
	SRR8316903	Complete white stage	0.013
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.004
	SRR8316905	Silver flowering stage	0.013
	SRR8316906	Gold flowering stage	0.049
	SRR8316907	Gold flowering stage	0.013
	SRR8316908	Gold flowering stage	0.045
SRP132670	SRR6706286	Control	0.004
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.009
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.008
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.151
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.013
	CNS0095603	Golden flower (diploid) 3	0.004
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.002
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.019
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.039
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.015
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.031
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.017
	CNS0095610	Silvery flower (tetraploid) 1	0.040
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.011
	CNS0095613	Golden flower (tetraploid) 1	0.010
	CNS0095614	Golden flower (tetraploid) 2	0.046
	CNS0095615	Golden flower (tetraploid) 3	0.012
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.015
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.002
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.003
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.019
	CRR073319	Tawny withering 2	0.220
	CRR073320	Tawny withering 3	0.000