Gene detail

Detail information of GWHGAAZE021022

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009354064.1	3.07821E-81	PREDICTED: receptor-like protein kinase FERONIA [Pyrus x bretschneideri]
COG	YP_003640725.1	0.00000006	serine/threonine protein kinase
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	2E-73	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|M1APN7\|M1APN7_SOLTU	3E-77	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027429}
TAIR10	AT3G51550.1	9E-66	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	32173867	32182539	+
GWHAAZE00000006	mRNA	32173867	32182539	+
GWHAAZE00000006	exon	32173867	32174539	+
GWHAAZE00000006	exon	32174642	32174695	+
GWHAAZE00000006	exon	32174779	32175011	+
GWHAAZE00000006	exon	32175123	32175232	+
GWHAAZE00000006	exon	32175327	32175680	+
GWHAAZE00000006	exon	32176249	32176385	+
GWHAAZE00000006	exon	32176469	32176581	+
GWHAAZE00000006	exon	32176687	32176729	+
GWHAAZE00000006	exon	32177941	32178011	+
GWHAAZE00000006	exon	32178351	32178494	+
GWHAAZE00000006	exon	32178900	32178979	+
GWHAAZE00000006	exon	32180402	32180552	+
GWHAAZE00000006	exon	32181342	32181978	+
GWHAAZE00000006	exon	32182085	32182539	+
GWHAAZE00000006	CDS	32173867	32174539	+
GWHAAZE00000006	CDS	32174642	32174695	+
GWHAAZE00000006	CDS	32174779	32175011	+
GWHAAZE00000006	CDS	32175123	32175232	+
GWHAAZE00000006	CDS	32175327	32175680	+
GWHAAZE00000006	CDS	32176249	32176385	+
GWHAAZE00000006	CDS	32176469	32176581	+
GWHAAZE00000006	CDS	32176687	32176729	+
GWHAAZE00000006	CDS	32177941	32178011	+
GWHAAZE00000006	CDS	32178351	32178494	+
GWHAAZE00000006	CDS	32178900	32178979	+
GWHAAZE00000006	CDS	32180402	32180552	+
GWHAAZE00000006	CDS	32181342	32181978	+
GWHAAZE00000006	CDS	32182085	32182539	+

Transcript Sequence
>GWHTAAZE021046 ATGCCATTCTATCTCACATTGGCAAATCATTTTGATCCAGTATCATCAATCAATCCACACCAGCATGTTGCTTTTCCAGGATTTACCTCAAGTTTTGTTACTTTCCCTCTCTTAATTCCCTCTCATGACAAAGATTTTATTCATAATATCGTCCCTTCGGTTGTTTTGTTAATCATAATCACTCTACGCGTCATCATTCCTCCTATCCTAAGTTTTCTTCGACGAGGAGACAAGTTTACCTCGGTAGATCAATATTGCCGTCGGTTAACATTTGCCGAGATCCGAGCAGCCACTCGGAACTTTTCCCATGGATTTGTTATCGGAAAAGGTGGGTTTGGTAAGGTTTTCAAAGGTGTCATTGATATTAATGGAGCTACTACGGTTGCCATAAAGCGATTGGATCCCTTGTCCAAACAAGGGGGTAAGGAATTTTCAACTGAGATAGAAATGCTTTCTAAAATTCGGCACAGTAATATTGTTTCTCTTATGGGTTACTGCGATGACAATGACGAAATGATCCTTGTTTACGAATACATGAAAAATGGAAGCTTGGCTGACCATCTTTACAAAGAAAAAGTAAGAAATGATAGTAATTCTAATATGTCGTGGGTAAAACGTGTTAAGATATGTATAGGGGCAGCACGGGGATTAGATTATCTTCACAGTGGCACAGGCCCAGCAAATCAGTCATTGACCCATGTTAGTACTCGTGTTAAAGGAACTCCAGTGTTGTGTGGAAGGCCGGCATTTGATTATAGACTACCTAAGGAGCAAATAAGTCTAGTGCTATGGGCCCAAGACTGCATCCAAGAAGAAAAAACACACTTGCTTATAGATCCCAATTTGAAGTGGGAAATTTTTGAGAATTCTTTGAAGGATTTTGTGAAAATTGCTGGTCAGTGCTTGCATAGTCGTTCGAAAAAACGACCTACAATGAGTGAGGTGGTGGCCTCGCTTGAGGATAATGCATATACGGATTCTTCGACCACTCTCGTGCTGTTATCCCACTCTGCACCCACACGGCCATTTGAAGGAATTGAAAAACCCTCTTTGGAGGAAGATACCTTGAGGGAGGATACACCTGGAGGCTCTGCTTCTGAAACCTTGTCCTTAATAAAGGGGAACATGACATGTGAAGAGCAGATCTATGACAACATTCTGGTGAGTGAGGTTGCGTCGACGTCCTCTCTCCAGGTTGGACCAGCATTACCGGAGAAGAAGGATTCTTCTGTACTTGATGACGACGTTTATGATTTTGGCGAGACTTTTGACAAGCGAAAGGCAGAGGGCTCTTCTGCTGTACTGTCGGGTATTGCATATACGGATTCTTCAAGTTTAAACGTTCTCATGCCATTGGTTTCCAACTTGCCTATAGGGCAAAATGAAGGGATTGAAAAAACCTCCGTGGCAGAAGATGCCTCGAGGGAGGATACACTTGGAGGTCCTGCTTCTGAAACTTTGTCCAATGTAACGGCAAACATGATATATGAAGAGCAGATCAATGAAAACATTCTTCACGCTCCCACAGTCGCTGATCGGACTGCTTCTTCTGCTTTAGAAGTAGAAGAGGGCCCTAGCATAGAAGGGGTTCGAGTCAATGGGGATGCAAAACTAGGAGGGGAACTTATAGCTTGTCCATATCCTATACGCGAAACTTCTCTGTGTAATTTTCAGTGGCTCCGTTATCTTCAGGATAACACAAAAATGTACATTGAGGAACCAGATATGCAACAGGAAATTGACAGATACATTTCTGAAGGCCTAGCCACATTCAATGTTCTGTTCTTGCCAGATTCCCATGGCGGCGTTGTGCCAACAACTCTCGTTTTGGAAAGGTCATGCTACCTTTTTGGGATCTATGGACCACCAGCTATTGAATTTTCTAGGCAATCAGCTAATGAAATTTCGAAGACATTTTGTGATGTTACTTCGATCGAAATTCCTCTTGGGCACCCTGCAGATTTTGTATTAAGATGTTCCGATGGTTCTTGGCATTCTTTTAAGACAGGCGGAGCAAAGTGTGAAAAGATTGAGCCAGAAAAGAAGAGTTATGTACAAGCTTTAATACTTTGTGGCTTTGGGCCAAAAAAATGGAAGCATCAGGAAGAGGCGGAGCATAGAGCAGCAAAACAAGGGAAAACAAATATATTGAATTGTAGAAAGCATCATCAATCAATCCACAGCAGCATGTTGCTTTATCCAGGATTTACCTCAAGTTTTGTTACTTTCCCTCTCTTAATTCACTCTCCTGACATAGACTTAGTTCATAAATTCGTCCTTTCGGTCGTTCTCTTAATCGTAACCACTCTAAGCTTCATCATTCCTCGTAACTTAAGCTTTTTTCGACGTGGAGAGAAATTCAACTACCGGGCGGCCGATCAAATTTGCCGTCAGTTTTCGATTGCAGAGATCCAAGCAGCCACTCACAATTTTTCCCATGGATTTGTAATCCGAAAAGGCGGATTTGGTAAGGTTTTCAAAGGTATCCTGGACAACGGAGCTACTACGGTTGCTATAAAGCAATTGGATCCTATATCCAAACAAGGGGGTAAGGAATTTACAACTGAGATAGAAATGCTTTCTAAAATTCGACACAGTCATGTTGTTTCTCTTCTTGGTTACTGCAATGGCAATGACGAAATGATCCTTGTTTATAAATACATGGAAAATGGAAGCTTGGTTGATCATCTTTACAAAGAAAAAGTAAGAAATGGTAGTAATTCTAATATGTCGTGGGTAAAACGAGTTAAGATCTGTATAGGAGCAGCTCGAGGATTAGATTATCTTCACACTGGCACAGGACCGGCAAATCAATCATTGACCTATGTTAGTACCCGTGTTAAAGGAACTTCAGGTAATTGCGATCCGGAGTATTTCTTGACTCGTCGTTTAGCTAGAAAATTATATGTTTATTCTTTTAAAGTAGTGTTGTTCGAAGTGTTGTGTGGAAGGCCGGCATTTGATTATAAACTGCCTAAGGAACAAATAAGCCTAGTGCTATGGGCCCAAGATTGCATCCAAGATGAAAAAACTCACTTGCTTATAGATCCCAATTTGAAGTGGGAAATTTTTGAGAATTCTTTGAAGGCTTTTGTGAATATTGCTGGTCAGTGCTTGCATAGTCGTTCGAAAAAACGACCTACCATGAGTGAGGTTGCGGCCTCACTTGAGGTTGCATTGGCATTACAGGAGAAGAAGGATTCTTCTTTACTTGATGAAGATATTTTTGATTTTGGTGAAACTTATGACAACTGA

Network for GWHGAAZE021022

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	106	222	4.50E-22
PF07714.18	PK_Tyr_Ser-Thr	817	931	2.30E-20

Protein Sequence

>GWHPAAZE021035
MPFYLTLANHFDPVSSINPHQHVAFPGFTSSFVTFPLLIPSHDKDFIHNIVPSVVLLIIITLRVIIPPILSFLRRGDKFTSVDQYCRRLTFAEIRAATRNFSHGFVIGKGGFGKVFKGVIDINGATTVAIKRLDPLSKQGGKEFSTEIEMLSKIRHSNIVSLMGYCDDNDEMILVYEYMKNGSLADHLYKEKVRNDSNSNMSWVKRVKICIGAARGLDYLHSGTGPANQSLTHVSTRVKGTPVLCGRPAFDYRLPKEQISLVLWAQDCIQEEKTHLLIDPNLKWEIFENSLKDFVKIAGQCLHSRSKKRPTMSEVVASLEDNAYTDSSTTLVLLSHSAPTRPFEGIEKPSLEEDTLREDTPGGSASETLSLIKGNMTCEEQIYDNILVSEVASTSSLQVGPALPEKKDSSVLDDDVYDFGETFDKRKAEGSSAVLSGIAYTDSSSLNVLMPLVSNLPIGQNEGIEKTSVAEDASREDTLGGPASETLSNVTANMIYEEQINENILHAPTVADRTASSALEVEEGPSIEGVRVNGDAKLGGELIACPYPIRETSLCNFQWLRYLQDNTKMYIEEPDMQQEIDRYISEGLATFNVLFLPDSHGGVVPTTLVLERSCYLFGIYGPPAIEFSRQSANEISKTFCDVTSIEIPLGHPADFVLRCSDGSWHSFKTGGAKCEKIEPEKKSYVQALILCGFGPKKWKHQEEAEHRAAKQGKTNILNCRKHHQSIHSSMLLYPGFTSSFVTFPLLIHSPDIDLVHKFVLSVVLLIVTTLSFIIPRNLSFFRRGEKFNYRAADQICRQFSIAEIQAATHNFSHGFVIRKGGFGKVFKGILDNGATTVAIKQLDPISKQGGKEFTTEIEMLSKIRHSHVVSLLGYCNGNDEMILVYKYMENGSLVDHLYKEKVRNGSNSNMSWVKRVKICIGAARGLDYLHTGTGPANQSLTYVSTRVKGTSGNCDPEYFLTRRLARKLYVYSFKVVLFEVLCGRPAFDYKLPKEQISLVLWAQDCIQDEKTHLLIDPNLKWEIFENSLKAFVNIAGQCLHSRSKKRPTMSEVAASLEVALALQEKKDSSLLDEDIFDFGETYDN

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.008
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.015
	SRR3591709	Stem	0.018
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.045
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.264
	SRR8316896	Juvenile bud stage	0.524
	SRR8316897	Juvenile bud stage	0.422
	SRR8316894	Third green stage	0.138
	SRR8316900	Third green stage	0.212
	SRR8316901	Third green stage	0.252
	SRR8316898	Complete white stage	0.081
	SRR8316899	Complete white stage	0.604
	SRR8316903	Complete white stage	0.308
	SRR8316902	Silver flowering stage	0.146
	SRR8316904	Silver flowering stage	0.163
	SRR8316905	Silver flowering stage	0.085
	SRR8316906	Gold flowering stage	0.258
	SRR8316907	Gold flowering stage	0.275
	SRR8316908	Gold flowering stage	0.208
SRP132670	SRR6706286	Control	0.397
	SRR6706287	Light intensity 50%	0.417
	SRR6706288	Light intensity 20%	0.278
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.206
	CNS0095593	Slightly white alabastrum(diploid) 2	0.213
	CNS0095594	Slightly white alabastrum(diploid) 3	0.093
	CNS0095595	Whole white alabastrum(diploid) 2	0.135
	CNS0095596	Whole white alabastrum(diploid) 3	0.045
	CNS0095597	Whole white alabastrum(diploid) 4	0.130
	CNS0095598	Silvery flower (diploied) 1	0.727
	CNS0095599	Silvery flower (diploied) 2	0.160
	CNS0095600	Silvery flower (diploied) 3	0.171
	CNS0095601	Golden flower (diploid) 1	0.274
	CNS0095602	Golden flower (diploid) 2	0.162
	CNS0095603	Golden flower (diploid) 3	0.178
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.002
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.048
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.020
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.007
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.008
	CNS0095610	Silvery flower (tetraploid) 1	0.014
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.006
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.001
CRA001975	CRR073297	Stem 1	0.102
	CRR073298	Stem 2	0.183
	CRR073299	Stem 3	0.068
	CRR073300	Leaf 1	0.093
	CRR073301	Leaf 2	0.168
	CRR073302	Leaf 3	0.017
	CRR073303	Juvenile bud 1	0.279
	CRR073304	Juvenile bud 2	0.007
	CRR073305	Juvenile bud 3	0.123
	CRR073306	Third green 1	0.006
	CRR073307	Third green 2	0.015
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.041
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.056
	CRR073316	Gold flowering 2	0.086
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.164
	CRR073319	Tawny withering 2	0.128
	CRR073320	Tawny withering 3	0.102