Gene detail

Detail information of GWHGAAZE020982

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002282857.1	PREDICTED: protein transport protein Sec24-like At3g07100 [Vitis vinifera]
Swissprot	tr\|Q9SFU0\|SC24A_ARATH	Protein transport protein Sec24-like At3g07100
trEMBL	tr\|F6H1Z6\|F6H1Z6_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46292.1}
TAIR10	AT3G07100.1	Sec23/Sec24 protein transport family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	29512910	29522853	-
GWHAAZE00000006	mRNA	29512910	29522853	-
GWHAAZE00000006	exon	29512910	29513143	-
GWHAAZE00000006	exon	29513577	29513765	-
GWHAAZE00000006	exon	29513850	29514172	-
GWHAAZE00000006	exon	29514266	29514393	-
GWHAAZE00000006	exon	29514924	29515080	-
GWHAAZE00000006	exon	29515202	29515351	-
GWHAAZE00000006	exon	29519108	29519339	-
GWHAAZE00000006	exon	29519521	29519687	-
GWHAAZE00000006	exon	29519810	29519921	-
GWHAAZE00000006	exon	29520499	29520689	-
GWHAAZE00000006	exon	29521487	29521625	-
GWHAAZE00000006	exon	29521729	29522853	-
GWHAAZE00000006	CDS	29521729	29522853	-
GWHAAZE00000006	CDS	29521487	29521625	-
GWHAAZE00000006	CDS	29520499	29520689	-
GWHAAZE00000006	CDS	29519810	29519921	-
GWHAAZE00000006	CDS	29519521	29519687	-
GWHAAZE00000006	CDS	29519108	29519339	-
GWHAAZE00000006	CDS	29515202	29515351	-
GWHAAZE00000006	CDS	29514924	29515080	-
GWHAAZE00000006	CDS	29514266	29514393	-
GWHAAZE00000006	CDS	29513850	29514172	-
GWHAAZE00000006	CDS	29513577	29513765	-
GWHAAZE00000006	CDS	29512910	29513143	-

Transcript Sequence
>GWHTAAZE021006 ATGGGGACTGAAAATCCAAACCGTTCAAATTTTCCGCAGAGACCTGCTGCTACACCCTTTGCTGCCCCTCAAAGTACAATGCCTTTTATATCATCTCGCCCCATGGTTGGCTCAGAGGCCTCTGCTTTCAGGCCAAGCTCCCCTCCTGTGCCACAAACTACAACACCTTTCTTATCACCTGGTCCTGTTGTTGGTTCAGAGGCCACCGGTTTTAGACCTGCCCCACCAGTTAGGCCTACTGGTACATCAATGCCTGGCCCACCATCAGGATATGGTCCACCATCTGCAGGACCTTTCCAGCGTTTCCCGACACCGCAATACCCTGGAATGGTTCAAGTACCACCTCCACAAGCTTCATCAATGGGGCAGACGGTTTTCCCCCAACAAGTTAAACCTCCTGCAGGCCAAGTTCCATCCGTGCCAGGTCCTTTTAAACCCCAGTCCCAGATGCCATCGGTGCCAATGGGATCTCTGCCTCAAAGCTTAAACACCATGCCACCTACAATGAATGCTCCTCAGTCAACTGTAGATTCATCATATTTTGCTCCCCGGCCGAATTTTCAATCATCTTCACCCCCCATGGGACCATCTTACTCTGCTCCCCGAGGCACAATGCCATCAGCTTTTCCTGGTTATCCTGGTAAGCAACCTAATGCAGTTACACAAGCTCCACCCCTACAGTCTGCACCCTTTCTCGCTCAACAAGGAGGTTATGGTGCACTGCCCCCTGGAGCATCCACTCCTTTTTATTCTCATCAAGGTGGATATGCCCCCCCTCCACCAGTTGCAGCTCCCTTAGGTGGCCAGTATTTAAGTGAACAAATGCGACCTCCAGGCTCTGCTCCTCCAATCGGAGCTGTACAGGGCCTGGTAGAGGACTTCAGTTCCCTGTCTCTTGGATCCGTTCCTGGATCGTTCGATCCTGGACTTGATTCTAAAGCATTGCCACGGCCATTAGATGGTGACGTTGAGCCAAGTTCTTTTGCTGAGAGATACCCCGCAAATTGCAGTTCTAGATATCTACGGCTTACAACCAGTGCCATACCAAATTCTCAGTCTTTGGTGTCAAGGTGGCACTTACCCCTTGGAGCTGTTGTCTGTCCTCTTGCAGAAGCTCCTGATGGGGAGGAAGTGCCAGTAGTTAATTTTGCCACGACTGGGATCATTCGATGTAGAAGATGTCGAACATATGTGAATCCTTACGTGACTTTCACAGACGGGGGAAGAAAGTGGCGATGCAACATATGTGCTTTGCTTAACGATGTTCCAGGTGATTATTTTGCCCACTTGGATGCCAGTGGCAGAAGAATTGATATCGATCAACGGCCTGAACTTATCAAGGGTAGTGTAGAATTTATTGCCCCAGCTGAGTACATGGTGCGGCCTCCAATGCCGCCATTATACTTTTTCCTTATCGATGTATCAATATCTGCTGTTAGAAGTGGAATGCTTGAGGTAGTTGCACAAACTATCAAGTCTTGTTTGGATAGGTTGCCTGGCAACCCCAGAACACAGATTGGGTTCATCACTTTTGACAGCACGATTCATTTTTACAATATGAAGGCATATCTGGATGATATTTTTGTTCCATTGCCTGATGATCTCCTTGTCAACTTGTCGGAGTCCAGAAATGTGGTGGATGCTTTCCTTGATAGCTTGCCCTCTATGTTTCACGACAATGTTAATGTGGAATCAGCTTTTGGCCCAGCTCTTAAAGCGGCATTTATGGTTATGAGCCAACTTGGTGGTAAATTGTTGATTTTCCAGAACACACTGCCATCACTTGGCATTGGCCGACTAAGGTTGCGTGGTGATGATCTCCGCGTTTATGGAACAGACAAAGAGCACGCGTTAAGAATACCAGAAGACCCATTTTATAAGCAGATGGCCGCTGATTTCACAAAATACCAGATTGCGGTGAATGTGTATGCATTCAGCGACAAGTATATTGATATAGCCTCCCTAGGAACTTTGGCAAAATATACTGGTGGGCAGGTATATTATTATCCAAGCTTCCAATCTGCAATTCATGAAGAGAAGTTGAGACACGAGTTGGCCAGAGATCTCACGAGAGAAACTGCTTGGGAAGCTGTCATGCGCATAAGATGTGGAAAAGGTGTGCGCTTCACATCTTATCATGGGAACTTTATGCTAAGATCCACAGATCTATTAGCACTCCCAGCTGTAGACTGTGATAAAGCTTATGCAATGCAGTTATGTCTTGAAGAAACCTTGCTAACGACTCAGACGGTGTATTTCCAAGTTGCTTTATTATACACTTCATCTTCTGGAGAAAGGCGTATTAGAGTACATACAGCCGCGGCACCAGTGGTTGCAGATCTAGGAGAGATGTACCGCCAGGCAGATTCAGGCGCTGTTGTTTCTTTGCTTAGTAGGCTGGCGATCGAGAAAACTCTTTCCTATAAACTGGAAGAAGCTCGAAGTGCTATTCAACTGAGAATTGTTAAAGCTCTTAGAGAATATCGAAATCTCTACGCTGTGCAACACCGTGTGGGAAGCAGGATGATATACCCGGAATCACTGAAATTCTTGCCTTTGTATGGATTAGCATTATGCAAATCAACACCTCTTCGTGGCGGTTATGCTGATGCCCAGCTTGATGAACGCTGTGCAGCAGGATACACCATGATGGCTTTACCTGTTAAAAACTTGTTGAAGCTTTTATATCCTAACTTGATACGTGTAGATGAGTATCTTTCAAAGGCATCTCTTAACGCTGATGAATTCAATAACTCTTGGAAAAGGCTAGCACTTACTGCAGAGAGCTTAGATTCCAGGGGTCTTTATGTTTATGATGACGGTTTGCGGTTTGTTATATGGTTCGGTAGAATGCTTTCACCTGATATTGCTATGAATCTACTTGGTGAAGACTTTGCTACAGACTACTCGAGGGTTAGCCTTTCCGAGCGTGACAATGAAATGTCAAGAAAGCTATTGGGGATATTTAAGAAATTTCGGGAGGGTGACCCATCATATTATCAGCTGTGTCATCTGGTGAGACAAGGTGAGCAGCCCAGGGAAGGGTTCTTTCTACTTGCAAACCTAATTGAAGACCAGGTTGGTGGTATGAATGGTTACGTTGATTGGATCCTGCAAATACACCGGCAAGTCCAACAAAATGCCTAA

Network for GWHGAAZE020982

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04810.16	zf-Sec23_Sec24	388	426	2.10E-17
PF04811.16	Sec23_trunk	463	688	1.70E-71
PF08033.13	Sec23_BS	694	777	2.10E-18
PF04815.16	Sec23_helical	789	892	3.70E-20

Protein Sequence

>GWHPAAZE020995
MGTENPNRSNFPQRPAATPFAAPQSTMPFISSRPMVGSEASAFRPSSPPVPQTTTPFLSPGPVVGSEATGFRPAPPVRPTGTSMPGPPSGYGPPSAGPFQRFPTPQYPGMVQVPPPQASSMGQTVFPQQVKPPAGQVPSVPGPFKPQSQMPSVPMGSLPQSLNTMPPTMNAPQSTVDSSYFAPRPNFQSSSPPMGPSYSAPRGTMPSAFPGYPGKQPNAVTQAPPLQSAPFLAQQGGYGALPPGASTPFYSHQGGYAPPPPVAAPLGGQYLSEQMRPPGSAPPIGAVQGLVEDFSSLSLGSVPGSFDPGLDSKALPRPLDGDVEPSSFAERYPANCSSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEAPDGEEVPVVNFATTGIIRCRRCRTYVNPYVTFTDGGRKWRCNICALLNDVPGDYFAHLDASGRRIDIDQRPELIKGSVEFIAPAEYMVRPPMPPLYFFLIDVSISAVRSGMLEVVAQTIKSCLDRLPGNPRTQIGFITFDSTIHFYNMKAYLDDIFVPLPDDLLVNLSESRNVVDAFLDSLPSMFHDNVNVESAFGPALKAAFMVMSQLGGKLLIFQNTLPSLGIGRLRLRGDDLRVYGTDKEHALRIPEDPFYKQMAADFTKYQIAVNVYAFSDKYIDIASLGTLAKYTGGQVYYYPSFQSAIHEEKLRHELARDLTRETAWEAVMRIRCGKGVRFTSYHGNFMLRSTDLLALPAVDCDKAYAMQLCLEETLLTTQTVYFQVALLYTSSSGERRIRVHTAAAPVVADLGEMYRQADSGAVVSLLSRLAIEKTLSYKLEEARSAIQLRIVKALREYRNLYAVQHRVGSRMIYPESLKFLPLYGLALCKSTPLRGGYADAQLDERCAAGYTMMALPVKNLLKLLYPNLIRVDEYLSKASLNADEFNNSWKRLALTAESLDSRGLYVYDDGLRFVIWFGRMLSPDIAMNLLGEDFATDYSRVSLSERDNEMSRKLLGIFKKFREGDPSYYQLCHLVRQGEQPREGFFLLANLIEDQVGGMNGYVDWILQIHRQVQQNA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14007	SEC24	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0030127	cellular_component	COPII vesicle coat
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.144
	SRR3591706	second leaf	25.383
	SRR3591707	mature leaf	24.154
	SRR3591708	Shoot apex	29.845
	SRR3591709	Stem	38.239
	SRR3591710	White floral bud	49.620
	SRR3591711	White flower	53.740
	SRR3591712	Green floral bud	54.705
	SRR3591713	Yellow flower	45.278
SRP173429	SRR8316895	Juvenile bud stage	27.255
	SRR8316896	Juvenile bud stage	36.046
	SRR8316897	Juvenile bud stage	17.383
	SRR8316894	Third green stage	17.515
	SRR8316900	Third green stage	43.282
	SRR8316901	Third green stage	41.857
	SRR8316898	Complete white stage	13.342
	SRR8316899	Complete white stage	42.617
	SRR8316903	Complete white stage	36.785
	SRR8316902	Silver flowering stage	19.915
	SRR8316904	Silver flowering stage	32.256
	SRR8316905	Silver flowering stage	13.247
	SRR8316906	Gold flowering stage	41.394
	SRR8316907	Gold flowering stage	44.902
	SRR8316908	Gold flowering stage	46.540
SRP132670	SRR6706286	Control	59.983
	SRR6706287	Light intensity 50%	55.892
	SRR6706288	Light intensity 20%	58.057
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.424
	CNS0095593	Slightly white alabastrum(diploid) 2	19.396
	CNS0095594	Slightly white alabastrum(diploid) 3	20.250
	CNS0095595	Whole white alabastrum(diploid) 2	20.569
	CNS0095596	Whole white alabastrum(diploid) 3	19.943
	CNS0095597	Whole white alabastrum(diploid) 4	18.896
	CNS0095598	Silvery flower (diploied) 1	25.866
	CNS0095599	Silvery flower (diploied) 2	22.130
	CNS0095600	Silvery flower (diploied) 3	63.367
	CNS0095601	Golden flower (diploid) 1	20.275
	CNS0095602	Golden flower (diploid) 2	59.517
	CNS0095603	Golden flower (diploid) 3	57.894
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.892
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.014
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.990
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.774
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.576
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.195
	CNS0095610	Silvery flower (tetraploid) 1	45.555
	CNS0095611	Silvery flower (tetraploid) 2	48.604
	CNS0095612	Silvery flower (tetraploid) 3	49.261
	CNS0095613	Golden flower (tetraploid) 1	19.831
	CNS0095614	Golden flower (tetraploid) 2	39.224
	CNS0095615	Golden flower (tetraploid) 3	47.363
CRA001975	CRR073297	Stem 1	40.371
	CRR073298	Stem 2	38.074
	CRR073299	Stem 3	28.775
	CRR073300	Leaf 1	41.333
	CRR073301	Leaf 2	38.840
	CRR073302	Leaf 3	32.461
	CRR073303	Juvenile bud 1	32.532
	CRR073304	Juvenile bud 2	30.248
	CRR073305	Juvenile bud 3	48.740
	CRR073306	Third green 1	32.274
	CRR073307	Third green 2	22.024
	CRR073308	Third green 3	31.535
	CRR073309	Second white 1	33.915
	CRR073310	Second white 2	32.572
	CRR073311	Second white 3	40.201
	CRR073312	Silver flowering 1	40.532
	CRR073313	Silver flowering 2	44.489
	CRR073314	Silver flowering 3	39.077
	CRR073315	Gold flowering 1	8.670
	CRR073316	Gold flowering 2	15.060
	CRR073317	Gold flowering 3	12.035
	CRR073318	Tawny withering 1	23.337
	CRR073319	Tawny withering 2	16.621
	CRR073320	Tawny withering 3	25.172