Detail information of GWHGAAZE020981


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010651407.16.42963E-73PREDICTED: glucosidase 2 subunit beta isoform X2 [Vitis vinifera]
Swissprottr|Q9FM96|PSL4_ARATH3E-55Glucosidase 2 subunit beta (Precursor)
trEMBLtr|D7SLN8|D7SLN8_VITVI3E-73Putative uncharacterized protein {ECO:0000313|EMBL:CBI16566.3}
TAIR10AT5G56360.16E-32calmodulin-binding protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene2942933229430662+
GWHAAZE00000006mRNA2942933229430662+
GWHAAZE00000006exon2942933229429662+
GWHAAZE00000006exon2943016729430271+
GWHAAZE00000006exon2943036029430461+
GWHAAZE00000006exon2943056229430662+
GWHAAZE00000006CDS2942933229429662+
GWHAAZE00000006CDS2943016729430271+
GWHAAZE00000006CDS2943036029430461+
GWHAAZE00000006CDS2943056229430662+
Transcript Sequence

Network for GWHGAAZE020981

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08288PRKCSH Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf65.787
SRR3591706second leaf36.412
SRR3591707mature leaf21.797
SRR3591708Shoot apex56.636
SRR3591709Stem44.854
SRR3591710White floral bud30.727
SRR3591711White flower32.204
SRR3591712Green floral bud58.355
SRR3591713Yellow flower16.532
SRP173429 SRR8316895Juvenile bud stage 41.180
SRR8316896Juvenile bud stage 56.311
SRR8316897Juvenile bud stage 22.828
SRR8316894Third green stage 20.523
SRR8316900Third green stage 58.229
SRR8316901Third green stage 52.903
SRR8316898Complete white stage 12.727
SRR8316899Complete white stage 41.416
SRR8316903Complete white stage 23.334
SRR8316902Silver flowering stage10.508
SRR8316904Silver flowering stage12.281
SRR8316905Silver flowering stage7.486
SRR8316906Gold flowering stage 16.583
SRR8316907Gold flowering stage 24.351
SRR8316908Gold flowering stage 24.821
SRP132670SRR6706286Control14.819
SRR6706287Light intensity 50%24.687
SRR6706288Light intensity 20%27.777
CNP0000432CNS0095592Slightly white alabastrum(diploid) 145.485
CNS0095593Slightly white alabastrum(diploid) 240.585
CNS0095594Slightly white alabastrum(diploid) 343.501
CNS0095595Whole white alabastrum(diploid) 243.394
CNS0095596Whole white alabastrum(diploid) 349.314
CNS0095597Whole white alabastrum(diploid) 432.103
CNS0095598Silvery flower (diploied) 122.579
CNS0095599Silvery flower (diploied) 230.042
CNS0095600Silvery flower (diploied) 329.688
CNS0095601Golden flower (diploid) 123.648
CNS0095602Golden flower (diploid) 224.582
CNS0095603Golden flower (diploid) 329.684
CNS0095604Slightly white alabastrum(tetraploid) 167.499
CNS0095605Slightly white alabastrum(tetraploid) 257.959
CNS0095606Slightly white alabastrum(tetraploid) 371.768
CNS0095607Whole white alabastrum(tetraploid) 152.345
CNS0095608Whole white alabastrum(tetraploid) 242.295
CNS0095609Whole white alabastrum(tetraploid) 353.736
CNS0095610Silvery flower (tetraploid) 133.848
CNS0095611Silvery flower (tetraploid) 230.108
CNS0095612Silvery flower (tetraploid) 329.064
CNS0095613Golden flower (tetraploid) 113.142
CNS0095614Golden flower (tetraploid) 225.202
CNS0095615Golden flower (tetraploid) 311.711
CRA001975CRR073297Stem 160.101
CRR073298Stem 257.404
CRR073299Stem 348.177
CRR073300Leaf 155.363
CRR073301Leaf 239.608
CRR073302Leaf 340.398
CRR073303Juvenile bud 145.004
CRR073304Juvenile bud 228.986
CRR073305Juvenile bud 337.148
CRR073306Third green 19.015
CRR073307Third green 28.658
CRR073308Third green 311.872
CRR073309Second white 112.186
CRR073310Second white 29.884
CRR073311Second white 37.894
CRR073312Silver flowering 17.269
CRR073313Silver flowering 23.140
CRR073314Silver flowering 38.610
CRR073315Gold flowering 17.998
CRR073316Gold flowering 219.972
CRR073317Gold flowering 36.814
CRR073318Tawny withering 135.411
CRR073319Tawny withering 235.698
CRR073320Tawny withering 348.983