Gene detail

Detail information of GWHGAAZE020976

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	3.0689E-146	unnamed protein product [Coffea canephora]
COG	YP_008151634.1	1E-23	hypothetical protein SCE1572_26190
Swissprot	tr\|Q41328\|PTI1_SOLLC	8E-126	Pto-interacting protein 1
trEMBL	tr\|M1APN7\|M1APN7_SOLTU	2E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027429}
TAIR10	AT3G17410.1	1E-99	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	29235049	29242022	+
GWHAAZE00000006	mRNA	29235049	29242022	+
GWHAAZE00000006	exon	29235049	29236102	+
GWHAAZE00000006	exon	29237020	29237315	+
GWHAAZE00000006	exon	29237419	29237545	+
GWHAAZE00000006	exon	29238591	29238737	+
GWHAAZE00000006	exon	29240410	29240677	+
GWHAAZE00000006	exon	29241306	29241483	+
GWHAAZE00000006	exon	29241594	29241680	+
GWHAAZE00000006	exon	29241861	29242022	+
GWHAAZE00000006	CDS	29235049	29236102	+
GWHAAZE00000006	CDS	29237020	29237315	+
GWHAAZE00000006	CDS	29237419	29237545	+
GWHAAZE00000006	CDS	29238591	29238737	+
GWHAAZE00000006	CDS	29240410	29240677	+
GWHAAZE00000006	CDS	29241306	29241483	+
GWHAAZE00000006	CDS	29241594	29241680	+
GWHAAZE00000006	CDS	29241861	29242022	+

Transcript Sequence
>GWHTAAZE021000 ATGCGGCCGCTTCAGGAATCAAATTCCAGTGAGAAATTTAACCCATCCTCTTCACTGCCATTGGAAAATCTGTCCCGTCGGTTTTCGCTTGATGAGATCTTAGCGGCCACACATGATTTCGATGATTCTTTGGTCATTGGCCAAGGGGGGTTCGCAAAGGTTTACAGAGGGGAAATTGATAATGGGGCTCATACTGTTGCCATAAAGCGAATGAAGCCTATGCTCAAAGAAGATGCGCCTGAGTTTTGGACAGAGATTTTGATGGTGTCCAAATTTCGACACATTAACCTTGTCTCTCTTATTGGCTACTGTGAAAGCGAAAATGAAATGATTCTTATTTACGAATATATGGCCCGTGGAACTCTAGAAGATAATTTGCATAAAATTGGTACAAGTGGAAATAACAATCTTCCTCTAAGTTGGGTCCAACGCCTTAAAATATGTATTGGTGCTGCTCGGGGGTTAGAGTACCTTCATACCGGTACTGGTATCCATCACAGAGTCATTCATCGCGATGTTAAGAGTTCAAATATACTGTTGGATGAGAATTGGGCAGCTAAAATCTCGGATTTTGGGATGTCAAAAATAGGTCCTGCAAATCAGTCAGACACCCACGTTAGCACCCGAGTTGTAGGCTCATTCGGTTATTTGGATCCAGATTACGCTTTCACCGGTAGCCTCACTAGGAAATCCGACGTGTACTCCTTTGGGGTTGTACTATTTGAAGTGTTGTGTGGGAGACCGGCCTTGGATCGAAGACTCCCTAAGGACCAAATGGGTTTAGCTGGGTGGGCGCACTACTGTGTCAGAAAAGGAAGAGTTGAGCAAATTATTGATCCCAATTTGAAGTCACAAATCGTGCCACGTAGTTTGCTGGCATTTGTGAAAGTTGCTGACCGATGCTTGCATGCTCGTCCAAAAGAACGCCCTACAATGACTGAGGTTCTGGCTGATCTTGAGCTTGCTTTGAATTTACAAGAGAACACAAAAGTTGCCAGTGGATTCACAGAAAAGTTCCGGCAGTTGTTTTTGGTCACACGTCGGCCAATATCAGATAATAATCTAGTTTATTATGCCACAGAGTCTGCACCAACTCAAACAGAGGCTGTGCCAGAAAACATAGTTGCTGCGTCAATTGACAGGCAGGCTGTAAACGTTGAGCCTATTGCCGTCCCTTCTGTTCAGCTGGATGAGTTGAGGAAAATAACATACAACTTTGGTAGAAAGGCTTTGATTTATGAGGGGGATTATGGAAGATTATACAATGGCATATTGAAAAGTGGGCGGGCTTCATGGATCAAAAAGTTTGATTTCAATGACGACCTTCCAGATCAAATTTTTTTAACACAGGTTTCGATGGCATCAAGACTTAAACATGAAAACGTGGTTGAGCTACTTAGTTATTGTGTGGATGGTGGCTTCCGTGTCCTTGCCTATGAGTATGCTCTGAATGGATCACTTCACGACATTCTTCATGCAAAGCCATTTTCCCATGGAAAAGGGATCGACCCTCTCGTGAGGAGGATTGATCCACTAGGCGAGGGAATGGTCCATTTTTCATGGGGATCGGTACATCCTGTGCCATGGCCTTGTTTGGCCCCTTTTTTAGAGGACTTTTGTATCAGACAAAAAGATGTGAAAGATGCGCAGCCCGGTTCAGTTCTATCATGGTCCCAACGAGTTAAAATTGCTGTTGGAGTAGCAAAAGGACTTGAATACTTGCATGAAAAGTCAGATCCCCATGTTGTCCATTGCAATATTAGGTCCTCCAATGTTTTACTTTTTGAGGATGATGTTGCAAAGATAGCAGACATGGACTTGTCAAAGCAGGCCCTTAATAGGCATCTTTATTCCAGTAATGCCGATATAACCTCTGGTTACTGTGCTCCTGAGATTAACCCGATGATGTGGGTTATGGACTTTGGCATCCCCTTTGAGCATGCAGTGACCGGAGAAATGAGTTCAACGAGTGACATTTACAGCTTTGGCATGGTCCTCTTGGAACTATTGACCGGCCGTAAACCTATTGACAATACACAGCCACATGGACAACAAAGTCTGTTCTTTTGGGCGACTCCAAAACTCAGCCAAGATAAAGTGAAGCATTGTATTGACCCTAAATTGAATGGAGAATTCCATCCCATACAAGCTGCAAAGATGGCTGAAGTTGCAGACTTGTGTCTGCAATACGACACTGCATTTCGTCCGACCATGAGCATTGTAGTTAAAGCCCTAGAGCCTCTGCTAACTGCTTTACCTGGACCTGGATGTGAGGCACCACACTTCGAATCACGCACCTTCCTTAATGACTCAATGTGA

Network for GWHGAAZE020976

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	45	318	6.80E-45
PF07714.18	PK_Tyr_Ser-Thr	412	745	2.40E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.761
	SRR3591706	second leaf	3.013
	SRR3591707	mature leaf	5.694
	SRR3591708	Shoot apex	4.025
	SRR3591709	Stem	4.550
	SRR3591710	White floral bud	4.665
	SRR3591711	White flower	5.702
	SRR3591712	Green floral bud	5.398
	SRR3591713	Yellow flower	4.574
SRP173429	SRR8316895	Juvenile bud stage	7.975
	SRR8316896	Juvenile bud stage	11.897
	SRR8316897	Juvenile bud stage	8.434
	SRR8316894	Third green stage	2.174
	SRR8316900	Third green stage	3.884
	SRR8316901	Third green stage	4.770
	SRR8316898	Complete white stage	1.128
	SRR8316899	Complete white stage	5.525
	SRR8316903	Complete white stage	1.116
	SRR8316902	Silver flowering stage	1.289
	SRR8316904	Silver flowering stage	1.660
	SRR8316905	Silver flowering stage	0.839
	SRR8316906	Gold flowering stage	3.402
	SRR8316907	Gold flowering stage	1.873
	SRR8316908	Gold flowering stage	2.951
SRP132670	SRR6706286	Control	6.273
	SRR6706287	Light intensity 50%	5.386
	SRR6706288	Light intensity 20%	5.649
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.666
	CNS0095593	Slightly white alabastrum(diploid) 2	6.115
	CNS0095594	Slightly white alabastrum(diploid) 3	8.473
	CNS0095595	Whole white alabastrum(diploid) 2	4.970
	CNS0095596	Whole white alabastrum(diploid) 3	3.384
	CNS0095597	Whole white alabastrum(diploid) 4	3.417
	CNS0095598	Silvery flower (diploied) 1	7.859
	CNS0095599	Silvery flower (diploied) 2	9.387
	CNS0095600	Silvery flower (diploied) 3	5.682
	CNS0095601	Golden flower (diploid) 1	9.033
	CNS0095602	Golden flower (diploid) 2	8.114
	CNS0095603	Golden flower (diploid) 3	7.998
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.968
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.227
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.723
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.348
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.720
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.533
	CNS0095610	Silvery flower (tetraploid) 1	2.331
	CNS0095611	Silvery flower (tetraploid) 2	2.768
	CNS0095612	Silvery flower (tetraploid) 3	1.735
	CNS0095613	Golden flower (tetraploid) 1	0.543
	CNS0095614	Golden flower (tetraploid) 2	1.801
	CNS0095615	Golden flower (tetraploid) 3	0.221
CRA001975	CRR073297	Stem 1	7.098
	CRR073298	Stem 2	5.456
	CRR073299	Stem 3	2.586
	CRR073300	Leaf 1	5.519
	CRR073301	Leaf 2	7.514
	CRR073302	Leaf 3	3.758
	CRR073303	Juvenile bud 1	3.413
	CRR073304	Juvenile bud 2	1.636
	CRR073305	Juvenile bud 3	3.374
	CRR073306	Third green 1	0.542
	CRR073307	Third green 2	0.704
	CRR073308	Third green 3	0.244
	CRR073309	Second white 1	0.244
	CRR073310	Second white 2	0.401
	CRR073311	Second white 3	0.860
	CRR073312	Silver flowering 1	0.785
	CRR073313	Silver flowering 2	1.024
	CRR073314	Silver flowering 3	0.783
	CRR073315	Gold flowering 1	5.532
	CRR073316	Gold flowering 2	11.524
	CRR073317	Gold flowering 3	3.313
	CRR073318	Tawny withering 1	6.746
	CRR073319	Tawny withering 2	11.202
	CRR073320	Tawny withering 3	4.055