Gene detail

Detail information of GWHGAAZE020954

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074250.1	0	PREDICTED: glucose-1-phosphate adenylyltransferase small subunit, chloroplastic [Sesamum indicum]
COG	YP_007128340.1	2E-103	Glucose-1-phosphate adenylyltransferase
Swissprot	tr\|Q42882\|GLGS_SOLLC	8E-119	Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic (Precursor)
trEMBL	tr\|A0A022RCJ6\|A0A022RCJ6_ERYGU	0	Glucose-1-phosphate adenylyltransferase {ECO:0000256\|RuleBase:RU003565} (Fragment)
TAIR10	AT1G05610.1	3E-117	ADP-glucose pyrophosphorylase small subunit 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	28328889	28334065	-
GWHAAZE00000006	mRNA	28328889	28334065	-
GWHAAZE00000006	exon	28333830	28334065	-
GWHAAZE00000006	exon	28332828	28333118	-
GWHAAZE00000006	exon	28331748	28332011	-
GWHAAZE00000006	exon	28331290	28331451	-
GWHAAZE00000006	exon	28330054	28330157	-
GWHAAZE00000006	exon	28329599	28329710	-
GWHAAZE00000006	exon	28328889	28328987	-
GWHAAZE00000006	five_prime_UTR	28333995	28334065	-
GWHAAZE00000006	CDS	28333830	28333994	-
GWHAAZE00000006	CDS	28332828	28333118	-
GWHAAZE00000006	CDS	28331748	28332011	-
GWHAAZE00000006	CDS	28331290	28331451	-
GWHAAZE00000006	CDS	28330054	28330157	-
GWHAAZE00000006	CDS	28329599	28329710	-
GWHAAZE00000006	CDS	28328889	28328987	-

Transcript Sequence
>GWHTAAZE020978 GTCTAGATCTAGTACGGACCGTTAATATATAGGCATCAGCATTGTCAGTCGCCAATTCATCCTCTACCATCATGGTGATGACATCACAGCTCTCCCTGCTCCCCAATTTTATGAACATCAACAAATTAAAGCCCCTCCATAAAACACCTTCAAGGTTTATTGTGACTAATTCACAGCGAAAGCAACAACCAGCTGATGATCAATGCCCAAGTTCACTCTTCCCTCCTGCAAATCAGAGTGTTGCAGCAATAGTGTTTGGAGATGGATCAAAGTCCATGCTGTATCCATTGACAAAGAGAAGATCAGAAGGGGCAATTCCAATAGCAGGAAACTATAGACTCATTGATGGAGTTGTGAGCAATTGCATCAACAGCAACATTACTAAAGTATATGCTCTCACTCAATTCAACTCCACCTCTCTAAATTCCCATCTCTCTCGGGCTTATTCTGGAGCCCGTCTAGCGCATGACGGGTTTGTTGAAGTAATTGCTGCATACCAGAGTACCGAAGATAATGGCTGGTTTCAGGGTACAGCTGATGCTGTAAGGAGATGTTTGTGGGTACTTGAAGAGTATCCAGTAACTGAGTTTGTGATACTTCCGGGTCACCATTTATACAAAATGGATTACCGAAATCTCGTACAGTCCCATCGCGACAACAAAGCCCAAATAACTGTTGCTGTCCTCAGTAAGAGAACATCTCAGCACATCATTCATGATCCCGGTTTTGGTATTTTCAAACTAAATTTACACAATAATCAAGTCATTGAGCATAAAGACAAGGCAGTTTTAGTACAAGATTATAATGATATTATAGATGAGGACCACTTCCCAAGTATGGGAATATATGTCATTAACAGAGATGTAATGATAAAGCTTCTAAAAGAATATTTCCCAAAAGCAAATGACTTAACAAGTGAAGTAATACTTGGAGCAATATCCTTGGGAATGAAGGTTCATGGGTATCAATTTGATGGGTATTGGGAAGACATGAGGAATATTGAAGCATTCTACCGTGCAAATATGGAAAGCACAAAGAAATCAAACATGGCATATAACTTCTACGATAGAGATTATCCTCTATACACTCTACCTAGGTATCTACCTCCGACTTTAATAACTGATGCTGTTATTACCAATTGTGTCATTGGCGATGGTTGCATTCTCAATAGATGCTACATCAAAGGAACAGTAGTTGGGTTGAGAACAAGAGTTGCAGATGGGGCCATAATCGAGGACTCGGTCATTATGGGTTCTGATATCTACCAA

Network for GWHGAAZE020954

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00483.24	NTP_transferase	59	322	4.10E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00975	glgC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520
		Biofilm formation - Escherichia coli	map02026

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0005978	biological_process	glycogen biosynthetic process
GO:0016779	molecular_function	nucleotidyltransferase activity
GO:0008878	molecular_function	glucose-1-phosphate adenylyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.898
	SRR3591706	second leaf	4.033
	SRR3591707	mature leaf	0.783
	SRR3591708	Shoot apex	3.990
	SRR3591709	Stem	9.605
	SRR3591710	White floral bud	1.077
	SRR3591711	White flower	0.862
	SRR3591712	Green floral bud	3.020
	SRR3591713	Yellow flower	0.247
SRP173429	SRR8316895	Juvenile bud stage	1.069
	SRR8316896	Juvenile bud stage	1.014
	SRR8316897	Juvenile bud stage	0.795
	SRR8316894	Third green stage	0.922
	SRR8316900	Third green stage	0.876
	SRR8316901	Third green stage	1.785
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.039
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.222
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.202
	SRR6706287	Light intensity 50%	0.203
	SRR6706288	Light intensity 20%	0.200
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.419
	CNS0095593	Slightly white alabastrum(diploid) 2	2.293
	CNS0095594	Slightly white alabastrum(diploid) 3	0.957
	CNS0095595	Whole white alabastrum(diploid) 2	0.326
	CNS0095596	Whole white alabastrum(diploid) 3	0.716
	CNS0095597	Whole white alabastrum(diploid) 4	0.041
	CNS0095598	Silvery flower (diploied) 1	0.035
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.097
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.023
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.972
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.954
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.702
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.770
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.392
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.890
	CNS0095610	Silvery flower (tetraploid) 1	0.056
	CNS0095611	Silvery flower (tetraploid) 2	0.085
	CNS0095612	Silvery flower (tetraploid) 3	0.062
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.598
	CRR073298	Stem 2	0.835
	CRR073299	Stem 3	0.553
	CRR073300	Leaf 1	0.838
	CRR073301	Leaf 2	0.847
	CRR073302	Leaf 3	0.925
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.018
	CRR073305	Juvenile bud 3	0.360
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.032
	CRR073308	Third green 3	0.226
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.825
	CRR073316	Gold flowering 2	0.592
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.976
	CRR073319	Tawny withering 2	1.090
	CRR073320	Tawny withering 3	2.110