Gene detail

Detail information of GWHGAAZE020946

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008223953.1	1.048E-103	PREDICTED: proteasome subunit beta type-6-like [Prunus mume]
COG	YP_005842405.1	4E-14	proteasome subunit Beta
Swissprot	tr\|Q8LD27\|PSB6_ARATH	3E-96	Proteasome subunit beta type-6 (Precursor)
trEMBL	tr\|M5XP39\|M5XP39_PRUPE	8E-103	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}
TAIR10	AT4G31300.3	3E-77	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	27893233	27908240	-
GWHAAZE00000006	mRNA	27893233	27908240	-
GWHAAZE00000006	exon	27908129	27908240	-
GWHAAZE00000006	exon	27907268	27907344	-
GWHAAZE00000006	exon	27902128	27902238	-
GWHAAZE00000006	exon	27901902	27901995	-
GWHAAZE00000006	exon	27895629	27895702	-
GWHAAZE00000006	exon	27894542	27894616	-
GWHAAZE00000006	exon	27893233	27893364	-
GWHAAZE00000006	CDS	27908129	27908240	-
GWHAAZE00000006	CDS	27907268	27907344	-
GWHAAZE00000006	CDS	27902128	27902238	-
GWHAAZE00000006	CDS	27901902	27901995	-
GWHAAZE00000006	CDS	27895629	27895702	-
GWHAAZE00000006	CDS	27894542	27894616	-
GWHAAZE00000006	CDS	27893233	27893364	-

Transcript Sequence
>GWHTAAZE020970 ATGGATCCAACGATGGCTGATCTGAACGCACCTCATTCCATGGGGACCACCATCATCGGCGTTACCTACAACGGCGGTGTTGTCCTCGGCGCCGATTCCAGAACCAGCACCGGTGTATATGTTGCAAATAGAGCATCAGACAAAATCACTCAACTAACTGATAATGTCTACTTGTGCCGCTCTGGATCGAATATGCTACAAACTGGACTTATAATTGGTGGATGGGACAAGCATGAAGGAGGTAAAATATATGGAGTGCCTCTCGGAGGTACAATTTTGGAGCAGCCTTTACAATTGGAGTTTTCCAATTGTAAACTCTGTTCTCCAGCTATAAGTTTATGTGCTGTTCTGTTGTGGAACATGTTGAATCTACGTATTAGCCTTCCTGAGCGCTGCTCTGGGTCTACTTATTTGTATGGTTTCTTTGATCAAGAATGGAAAGAAGGGATGACAAAAGAGGAAGCTGAGAAATTAGTGGTGAAGGCAGTTTCTCTTGCAATTGCCCGAGATGGTGCTAGTGGCGGTGTTGTTCGGACTGTAACTATAAACTCAGAAGGAGTAGAAAGGAAATTCTACCCAGCCCACACATTGCCACTGTGGCATGAGGAGCTGGCCGCACATAATTCGCTGCTCGATATACTATCGTCCACCTCTCCTGATCCAATGGTTAGTTAA

Network for GWHGAAZE020946

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00227.27	Proteasome	14	63	1.40E-11
PF00227.27	Proteasome	133	182	5.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02738	PSMB6	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0005839	cellular_component	proteasome core complex
GO:0004175	molecular_function	endopeptidase activity
GO:0004298	molecular_function	threonine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.107
	SRR3591706	second leaf	2.063
	SRR3591707	mature leaf	2.722
	SRR3591708	Shoot apex	4.381
	SRR3591709	Stem	6.400
	SRR3591710	White floral bud	5.344
	SRR3591711	White flower	8.917
	SRR3591712	Green floral bud	8.398
	SRR3591713	Yellow flower	8.312
SRP173429	SRR8316895	Juvenile bud stage	4.668
	SRR8316896	Juvenile bud stage	6.997
	SRR8316897	Juvenile bud stage	4.503
	SRR8316894	Third green stage	2.361
	SRR8316900	Third green stage	7.675
	SRR8316901	Third green stage	6.181
	SRR8316898	Complete white stage	2.417
	SRR8316899	Complete white stage	9.095
	SRR8316903	Complete white stage	3.622
	SRR8316902	Silver flowering stage	2.500
	SRR8316904	Silver flowering stage	2.064
	SRR8316905	Silver flowering stage	0.902
	SRR8316906	Gold flowering stage	7.721
	SRR8316907	Gold flowering stage	6.370
	SRR8316908	Gold flowering stage	10.373
SRP132670	SRR6706286	Control	7.970
	SRR6706287	Light intensity 50%	8.250
	SRR6706288	Light intensity 20%	9.712
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.766
	CNS0095593	Slightly white alabastrum(diploid) 2	4.878
	CNS0095594	Slightly white alabastrum(diploid) 3	5.468
	CNS0095595	Whole white alabastrum(diploid) 2	5.133
	CNS0095596	Whole white alabastrum(diploid) 3	4.665
	CNS0095597	Whole white alabastrum(diploid) 4	4.421
	CNS0095598	Silvery flower (diploied) 1	3.312
	CNS0095599	Silvery flower (diploied) 2	5.041
	CNS0095600	Silvery flower (diploied) 3	8.557
	CNS0095601	Golden flower (diploid) 1	3.546
	CNS0095602	Golden flower (diploid) 2	5.561
	CNS0095603	Golden flower (diploid) 3	5.301
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.378
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.497
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.718
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.346
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.041
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.086
	CNS0095610	Silvery flower (tetraploid) 1	14.001
	CNS0095611	Silvery flower (tetraploid) 2	12.096
	CNS0095612	Silvery flower (tetraploid) 3	8.294
	CNS0095613	Golden flower (tetraploid) 1	9.313
	CNS0095614	Golden flower (tetraploid) 2	12.223
	CNS0095615	Golden flower (tetraploid) 3	7.283
CRA001975	CRR073297	Stem 1	9.336
	CRR073298	Stem 2	6.811
	CRR073299	Stem 3	9.504
	CRR073300	Leaf 1	8.148
	CRR073301	Leaf 2	7.968
	CRR073302	Leaf 3	11.673
	CRR073303	Juvenile bud 1	10.697
	CRR073304	Juvenile bud 2	10.542
	CRR073305	Juvenile bud 3	10.107
	CRR073306	Third green 1	3.352
	CRR073307	Third green 2	3.376
	CRR073308	Third green 3	2.101
	CRR073309	Second white 1	6.125
	CRR073310	Second white 2	5.060
	CRR073311	Second white 3	3.383
	CRR073312	Silver flowering 1	2.329
	CRR073313	Silver flowering 2	2.819
	CRR073314	Silver flowering 3	1.314
	CRR073315	Gold flowering 1	6.652
	CRR073316	Gold flowering 2	3.991
	CRR073317	Gold flowering 3	4.564
	CRR073318	Tawny withering 1	8.958
	CRR073319	Tawny withering 2	4.971
	CRR073320	Tawny withering 3	5.596