Detail information of GWHGAAZE020926


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009773107.12.8527E-174PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Nicotiana sylvestris]
COGYP_001212331.15E-15serine/threonine protein kinase
Swissprottr|Q05609|CTR1_ARATH1E-27Serine/threonine-protein kinase CTR1
trEMBLtr|A0A067KFW8|A0A067KFW8_JATCU5E-174Uncharacterized protein {ECO:0000313|EMBL:KDP35126.1}
TAIR10AT2G43850.13E-138Integrin-linked protein kinase family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene2712889227142090-
GWHAAZE00000006mRNA2712889227142090-
GWHAAZE00000006exon2712889227129177-
GWHAAZE00000006exon2713102327131154-
GWHAAZE00000006exon2713151527131574-
GWHAAZE00000006exon2713305527133179-
GWHAAZE00000006exon2713400827134093-
GWHAAZE00000006exon2713472527134850-
GWHAAZE00000006exon2713515127135253-
GWHAAZE00000006exon2713603827136158-
GWHAAZE00000006exon2713794627138031-
GWHAAZE00000006exon2713893427139005-
GWHAAZE00000006exon2713908527139159-
GWHAAZE00000006exon2714035627140541-
GWHAAZE00000006exon2714177327142090-
GWHAAZE00000006CDS2714177327142090-
GWHAAZE00000006CDS2714035627140541-
GWHAAZE00000006CDS2713908527139159-
GWHAAZE00000006CDS2713893427139005-
GWHAAZE00000006CDS2713794627138031-
GWHAAZE00000006CDS2713603827136158-
GWHAAZE00000006CDS2713515127135253-
GWHAAZE00000006CDS2713472527134850-
GWHAAZE00000006CDS2713400827134093-
GWHAAZE00000006CDS2713305527133179-
GWHAAZE00000006CDS2713151527131574-
GWHAAZE00000006CDS2713102327131154-
GWHAAZE00000006CDS2712889227129177-
Transcript Sequence

Network for GWHGAAZE020926

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12796.8Ank_2391015.00E-09
PF07714.18PK_Tyr_Ser-Thr2224757.60E-32
PF13456.7RVT_35305842.40E-06
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyTKL-Pl-5

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding
GO:0003676molecular_functionnucleic acid binding
GO:0004523molecular_functionRNA-DNA hybrid ribonuclease activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.060
SRR3591706second leaf23.844
SRR3591707mature leaf41.526
SRR3591708Shoot apex22.490
SRR3591709Stem42.161
SRR3591710White floral bud70.675
SRR3591711White flower22.717
SRR3591712Green floral bud56.304
SRR3591713Yellow flower21.423
SRP173429 SRR8316895Juvenile bud stage 18.318
SRR8316896Juvenile bud stage 32.383
SRR8316897Juvenile bud stage 11.582
SRR8316894Third green stage 11.934
SRR8316900Third green stage 40.106
SRR8316901Third green stage 39.147
SRR8316898Complete white stage 11.136
SRR8316899Complete white stage 32.785
SRR8316903Complete white stage 16.887
SRR8316902Silver flowering stage7.166
SRR8316904Silver flowering stage11.455
SRR8316905Silver flowering stage5.396
SRR8316906Gold flowering stage 12.955
SRR8316907Gold flowering stage 13.218
SRR8316908Gold flowering stage 12.429
SRP132670SRR6706286Control28.564
SRR6706287Light intensity 50%28.919
SRR6706288Light intensity 20%30.060
CNP0000432CNS0095592Slightly white alabastrum(diploid) 130.093
CNS0095593Slightly white alabastrum(diploid) 226.418
CNS0095594Slightly white alabastrum(diploid) 332.348
CNS0095595Whole white alabastrum(diploid) 268.216
CNS0095596Whole white alabastrum(diploid) 370.630
CNS0095597Whole white alabastrum(diploid) 499.448
CNS0095598Silvery flower (diploied) 139.894
CNS0095599Silvery flower (diploied) 231.433
CNS0095600Silvery flower (diploied) 318.799
CNS0095601Golden flower (diploid) 127.532
CNS0095602Golden flower (diploid) 225.582
CNS0095603Golden flower (diploid) 323.808
CNS0095604Slightly white alabastrum(tetraploid) 148.812
CNS0095605Slightly white alabastrum(tetraploid) 251.521
CNS0095606Slightly white alabastrum(tetraploid) 322.284
CNS0095607Whole white alabastrum(tetraploid) 1113.895
CNS0095608Whole white alabastrum(tetraploid) 2138.560
CNS0095609Whole white alabastrum(tetraploid) 362.182
CNS0095610Silvery flower (tetraploid) 119.031
CNS0095611Silvery flower (tetraploid) 219.567
CNS0095612Silvery flower (tetraploid) 317.539
CNS0095613Golden flower (tetraploid) 111.091
CNS0095614Golden flower (tetraploid) 217.122
CNS0095615Golden flower (tetraploid) 314.350
CRA001975CRR073297Stem 125.295
CRR073298Stem 221.522
CRR073299Stem 314.490
CRR073300Leaf 136.398
CRR073301Leaf 224.834
CRR073302Leaf 313.738
CRR073303Juvenile bud 130.043
CRR073304Juvenile bud 220.558
CRR073305Juvenile bud 312.175
CRR073306Third green 18.334
CRR073307Third green 27.271
CRR073308Third green 38.966
CRR073309Second white 12.193
CRR073310Second white 23.520
CRR073311Second white 32.289
CRR073312Silver flowering 15.247
CRR073313Silver flowering 25.468
CRR073314Silver flowering 32.570
CRR073315Gold flowering 120.085
CRR073316Gold flowering 225.354
CRR073317Gold flowering 312.111
CRR073318Tawny withering 121.647
CRR073319Tawny withering 221.534
CRR073320Tawny withering 316.947