Gene detail

Detail information of GWHGAAZE020896

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHJ80962.1	0	mitogen-activated protein kinase 2 [Morus notabilis]
COG	YP_004483749.1	1E-22	serine/threonine protein kinase
Swissprot	tr\|Q40532\|NTF4_TOBAC	0	Mitogen-activated protein kinase homolog NTF4
trEMBL	tr\|W8EEW5\|W8EEW5_9ROSA	0	Mitogen-activated protein kinase {ECO:0000256\|RuleBase:RU361165}
TAIR10	AT2G43790.1	1E-143	MAP kinase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	25502364	25510627	+
GWHAAZE00000006	mRNA	25502364	25510627	+
GWHAAZE00000006	exon	25502364	25502596	+
GWHAAZE00000006	exon	25503258	25503387	+
GWHAAZE00000006	exon	25505044	25505181	+
GWHAAZE00000006	exon	25510274	25510627	+
GWHAAZE00000006	CDS	25502364	25502596	+
GWHAAZE00000006	CDS	25503258	25503387	+
GWHAAZE00000006	CDS	25505044	25505181	+
GWHAAZE00000006	CDS	25510274	25510627	+

Transcript Sequence
>GWHTAAZE020920 ATGGACGCTCAGCATTCCGACACCGTAATGTCAGAGGCGGCTGCGCCACCTCCTCAATCCGATCCACCGCCTCAGCAGCCGCCGGTGGCTGCCGGGATCGAGAATATTCCGGCGACGATGAGCCACGGCGGCCGCTTCATACAATACAACATCTTCGGGAACATCTTCGAAGTCACCGCCAAGTATAAACCCCCAATCATGCCTATCGGCAAAGGCGCTTATGGAATAGTATGTTCGGCTTTAAATTCGGAAACGAATGAACACGTTGCAATAAAGAAGATTGCAAATGCTTTTGATAACAAAATTGATGCCAAGAGGACTCTGCGTGAGATCAAGCTTCTCCGTCACATGGATCATGAAAACGTTGTTGCAATTAGAGATATTATACCACCGCCACAGAGGGCGTTTTTTAATGATGTTTACATTGCCTATGAGCTTATGGACACTGATCTCCATCAAATTATTCGTTCTAATCAATCCTTATCAGAGGAGCATTGCCAGTATTTCTTGTATCAGATCCTCCGGGGGTTAAAATACATACATTCTGCAAATGTTCTTCACAGGGACTTGAAGCCAAGCAATCTCTTGCTCAATGCGAATTGCGATCTGAAAATATGTGATTTTGGATTAGCTCGAGTGACTTCCGAGACGGATTTTATGACAGAATATGTTGTTACAAGATGGTACAGGGCACCAGAGCTCTTGCTAAATTCTTCTGATTATACTGCTGCCATTGATGTTTGGTCAGTGGGTTGCATTTTCATGGAATTGATGGACCGAAAGCCTTTGTTTCCTGGTAGAGACCACGTTCATCAACTGCGATTGCTTATGGAGGTGATTTGTTTCTTTGTTTAA

Network for GWHGAAZE020896

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	68	271	2.30E-65

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_MAPK

KEGG pathway

KO	Enzyme	pathway	mapID
K14512	MPK6	MAPK signaling pathway - plant	map04016
		Plant hormone signal transduction	map04075
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004707	molecular_function	MAP kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.447
	SRR3591706	second leaf	21.852
	SRR3591707	mature leaf	17.219
	SRR3591708	Shoot apex	24.951
	SRR3591709	Stem	36.092
	SRR3591710	White floral bud	30.009
	SRR3591711	White flower	31.221
	SRR3591712	Green floral bud	27.021
	SRR3591713	Yellow flower	30.759
SRP173429	SRR8316895	Juvenile bud stage	13.548
	SRR8316896	Juvenile bud stage	17.776
	SRR8316897	Juvenile bud stage	4.778
	SRR8316894	Third green stage	8.199
	SRR8316900	Third green stage	28.001
	SRR8316901	Third green stage	24.658
	SRR8316898	Complete white stage	10.085
	SRR8316899	Complete white stage	33.912
	SRR8316903	Complete white stage	22.089
	SRR8316902	Silver flowering stage	15.214
	SRR8316904	Silver flowering stage	23.563
	SRR8316905	Silver flowering stage	11.697
	SRR8316906	Gold flowering stage	28.580
	SRR8316907	Gold flowering stage	25.508
	SRR8316908	Gold flowering stage	27.219
SRP132670	SRR6706286	Control	30.175
	SRR6706287	Light intensity 50%	37.204
	SRR6706288	Light intensity 20%	31.176
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.007
	CNS0095593	Slightly white alabastrum(diploid) 2	11.761
	CNS0095594	Slightly white alabastrum(diploid) 3	10.974
	CNS0095595	Whole white alabastrum(diploid) 2	15.915
	CNS0095596	Whole white alabastrum(diploid) 3	13.542
	CNS0095597	Whole white alabastrum(diploid) 4	21.353
	CNS0095598	Silvery flower (diploied) 1	15.642
	CNS0095599	Silvery flower (diploied) 2	13.874
	CNS0095600	Silvery flower (diploied) 3	52.944
	CNS0095601	Golden flower (diploid) 1	11.427
	CNS0095602	Golden flower (diploid) 2	37.295
	CNS0095603	Golden flower (diploid) 3	30.355
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.101
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.020
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.624
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.436
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.859
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.203
	CNS0095610	Silvery flower (tetraploid) 1	39.578
	CNS0095611	Silvery flower (tetraploid) 2	50.421
	CNS0095612	Silvery flower (tetraploid) 3	35.800
	CNS0095613	Golden flower (tetraploid) 1	22.744
	CNS0095614	Golden flower (tetraploid) 2	27.873
	CNS0095615	Golden flower (tetraploid) 3	63.686
CRA001975	CRR073297	Stem 1	17.833
	CRR073298	Stem 2	27.831
	CRR073299	Stem 3	21.061
	CRR073300	Leaf 1	25.694
	CRR073301	Leaf 2	20.415
	CRR073302	Leaf 3	22.339
	CRR073303	Juvenile bud 1	31.327
	CRR073304	Juvenile bud 2	30.515
	CRR073305	Juvenile bud 3	31.779
	CRR073306	Third green 1	24.981
	CRR073307	Third green 2	22.533
	CRR073308	Third green 3	23.069
	CRR073309	Second white 1	30.641
	CRR073310	Second white 2	35.669
	CRR073311	Second white 3	22.626
	CRR073312	Silver flowering 1	26.817
	CRR073313	Silver flowering 2	23.219
	CRR073314	Silver flowering 3	30.901
	CRR073315	Gold flowering 1	14.497
	CRR073316	Gold flowering 2	14.568
	CRR073317	Gold flowering 3	15.996
	CRR073318	Tawny withering 1	19.661
	CRR073319	Tawny withering 2	12.209
	CRR073320	Tawny withering 3	17.535