Gene detail

Detail information of GWHGAAZE020808

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAA07681.1	0	stearoyl-acyl carrier protein desaturase [Sesamum indicum]
COG	YP_006369323.1	2E-13	Fatty acid desaturase
Swissprot	tr\|P22337\|STAD_RICCO	0	Acyl-[acyl-carrier-protein] desaturase, chloroplastic (Precursor)
trEMBL	tr\|Q43140\|Q43140_SESIN	0	Acyl-[acyl-carrier-protein] desaturase {ECO:0000256\|RuleBase:RU000582} (Precursor)
TAIR10	AT2G43710.1	6E-139	Plant stearoyl-acyl-carrier-protein desaturase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	22065144	22068345	-
GWHAAZE00000006	mRNA	22065144	22068345	-
GWHAAZE00000006	exon	22065144	22065704	-
GWHAAZE00000006	exon	22067213	22067369	-
GWHAAZE00000006	exon	22067465	22067716	-
GWHAAZE00000006	exon	22068284	22068345	-
GWHAAZE00000006	CDS	22068284	22068345	-
GWHAAZE00000006	CDS	22067465	22067716	-
GWHAAZE00000006	CDS	22067213	22067369	-
GWHAAZE00000006	CDS	22065144	22065704	-

Transcript Sequence
>GWHTAAZE020832 ATGTTCACAATGTACTATAATGTGGTTGAACATAAATTGGATCATGACCACTCAGTTTTTAGGGAAGTTGAAAATCTGAAGAAGCCGTTCAGCCCTCCAAGAGAGGTACACGTGCAAGTGACCCACTCAATGCCATCCCAAAAGATTGAGATCTTCAAATCACTGGAGGATTGGGCCGAACAAAACATACTGGTTCACCTAAAACCCGTAGAGAAGTGCTGGCAACCACAAGATTTTCTTCCCGATCCAACATCGGACGGTTTTGAAGAGCAAGTCAAGGAACTAAGGGAGAGGGCGAAGGAGCTTCCAGATGACGGGGCCAGCCCTACTAGTTGGGCTGTTTGGACGAGGCTTGGACAGCTGAAGAAAACAGGCACGGTGATCTTCTCAATAAGTATCTCTACCTTTCTGGGACGAGTCGATATGAGGCAAATTGAGAAGACTATTCAGTATCTGGTTGGATCGGGAATGGATCCACGGACAGAAAACAATCCCTACCTCGGATTCATCTATACCTCGTTCCAAGAACGGGCAACGTTCATCTCACATGGCAACACAGGAAGGCTAGCCAAAGAGCATGGAGACCTAAAACTAGCCCAAATATGTGGTACAATAGCCGCGGACGAGAAACGCCATGAGACCGCGTACACCAAAATAGTGGAAAAGCTATTTGAGATCGACCCAAATGATACAGTCCTTGCTTTTGAAGACATGATGAGGAAAAAAATCTCAATGCCGGCCCACTTAATGTTTGATGGTCGTGATGACAACCTTTTCGAGCACTTCTCAGCTGTGGCTCAGCGCCTTGGGGTCTACACTGCAAGGGACTATGCAGATATATTGGAGCATTTGGTTAAAAGGTGGAACATAGCAGATCTAACTGGCCTTTCGGGTAAAGGGCAAGCTGCTCAACACTATGTTTGTGAGTTACCTTCTAAAATTAGAAGGATCGAGGAGAGAGCTCGAGCGAGGGCGAAAGAGGGACCCGCAGTTCCATTTAGCTGGGTCTCTGATAGAAAAGTTCAGATTTGA

Network for GWHGAAZE020808

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03405.15	FA_desaturase_2	105	336	3.80E-93

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03921	FAB2, SSI2, desA1	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

GO term	Ontology	Name
GO:0006631	biological_process	fatty acid metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0045300	molecular_function	acyl-[acyl-carrier-protein] desaturase activity
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.417
	SRR3591706	second leaf	66.894
	SRR3591707	mature leaf	24.433
	SRR3591708	Shoot apex	117.200
	SRR3591709	Stem	15.959
	SRR3591710	White floral bud	20.817
	SRR3591711	White flower	11.086
	SRR3591712	Green floral bud	22.012
	SRR3591713	Yellow flower	3.651
SRP173429	SRR8316895	Juvenile bud stage	26.153
	SRR8316896	Juvenile bud stage	32.047
	SRR8316897	Juvenile bud stage	14.165
	SRR8316894	Third green stage	11.329
	SRR8316900	Third green stage	29.703
	SRR8316901	Third green stage	26.124
	SRR8316898	Complete white stage	3.395
	SRR8316899	Complete white stage	15.306
	SRR8316903	Complete white stage	5.428
	SRR8316902	Silver flowering stage	3.376
	SRR8316904	Silver flowering stage	4.356
	SRR8316905	Silver flowering stage	2.440
	SRR8316906	Gold flowering stage	7.256
	SRR8316907	Gold flowering stage	7.599
	SRR8316908	Gold flowering stage	7.008
SRP132670	SRR6706286	Control	23.439
	SRR6706287	Light intensity 50%	24.975
	SRR6706288	Light intensity 20%	25.798
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.134
	CNS0095593	Slightly white alabastrum(diploid) 2	24.391
	CNS0095594	Slightly white alabastrum(diploid) 3	36.313
	CNS0095595	Whole white alabastrum(diploid) 2	33.339
	CNS0095596	Whole white alabastrum(diploid) 3	41.377
	CNS0095597	Whole white alabastrum(diploid) 4	34.125
	CNS0095598	Silvery flower (diploied) 1	19.329
	CNS0095599	Silvery flower (diploied) 2	15.238
	CNS0095600	Silvery flower (diploied) 3	11.642
	CNS0095601	Golden flower (diploid) 1	14.739
	CNS0095602	Golden flower (diploid) 2	18.441
	CNS0095603	Golden flower (diploid) 3	18.341
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.904
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.217
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.840
	CNS0095607	Whole white alabastrum(tetraploid) 1	42.079
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.750
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.431
	CNS0095610	Silvery flower (tetraploid) 1	6.036
	CNS0095611	Silvery flower (tetraploid) 2	9.811
	CNS0095612	Silvery flower (tetraploid) 3	9.540
	CNS0095613	Golden flower (tetraploid) 1	5.787
	CNS0095614	Golden flower (tetraploid) 2	8.115
	CNS0095615	Golden flower (tetraploid) 3	5.965
CRA001975	CRR073297	Stem 1	72.075
	CRR073298	Stem 2	62.193
	CRR073299	Stem 3	76.866
	CRR073300	Leaf 1	42.780
	CRR073301	Leaf 2	48.339
	CRR073302	Leaf 3	51.344
	CRR073303	Juvenile bud 1	42.412
	CRR073304	Juvenile bud 2	34.675
	CRR073305	Juvenile bud 3	31.458
	CRR073306	Third green 1	14.546
	CRR073307	Third green 2	17.857
	CRR073308	Third green 3	14.581
	CRR073309	Second white 1	10.672
	CRR073310	Second white 2	8.103
	CRR073311	Second white 3	7.363
	CRR073312	Silver flowering 1	17.934
	CRR073313	Silver flowering 2	23.116
	CRR073314	Silver flowering 3	14.461
	CRR073315	Gold flowering 1	62.372
	CRR073316	Gold flowering 2	74.930
	CRR073317	Gold flowering 3	68.057
	CRR073318	Tawny withering 1	87.385
	CRR073319	Tawny withering 2	41.358
	CRR073320	Tawny withering 3	106.912