Gene detail

Detail information of GWHGAAZE020786

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP44234.1	7.1641E-160	hypothetical protein JCGZ_05701 [Jatropha curcas]
COG	YP_006369323.1	2E-13	Fatty acid desaturase
Swissprot	tr\|P22337\|STAD_RICCO	2E-161	Acyl-[acyl-carrier-protein] desaturase, chloroplastic (Precursor)
trEMBL	tr\|A0A067LJ27\|A0A067LJ27_JATCU	3E-160	Acyl-[acyl-carrier-protein] desaturase {ECO:0000256\|RuleBase:RU000582}
TAIR10	AT2G43710.1	6E-115	Plant stearoyl-acyl-carrier-protein desaturase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	21079900	21082926	+
GWHAAZE00000006	mRNA	21079900	21082926	+
GWHAAZE00000006	exon	21079900	21080039	+
GWHAAZE00000006	exon	21080582	21081086	+
GWHAAZE00000006	exon	21082753	21082926	+
GWHAAZE00000006	CDS	21079900	21080039	+
GWHAAZE00000006	CDS	21080582	21081086	+
GWHAAZE00000006	CDS	21082753	21082926	+

Transcript Sequence
>GWHTAAZE020810 ATGACTCTGAAACTCAATACCCTCTCCTCCTTTCAATCACAGAAACAGCACTATTCTTCTTTCTCTTTTCCAAGAATGGCCAATCTTAGATCTCCCTCTCCCAAGTTTTTCATGGCTTCAACCTTTAGCTCTGGCTCCAGGGAAGTTGAAAATCTGAAGAAGCAGTTGAGCTCTCCAAGAGAGGTTCAAATGCAAGTGAGTCACTCAATGCCGCCCGAAAAGATCGAGATCTTCAAATCATTGGACGATTGGGCCGAACAAAACGTACTGGTTCACCTAAAACCCGTAGAGAAATGCTGGCAACCACAGGATTTTCTTCCCAATCCAGCTTCGGATGGTTTCGAAGAGCAAGTGAAGGAGCTAAGGGAGAGGACGAAGGAGGTTCCGGATGAGTACTTTGTTGTTTTGGTCGGAGATATGATCACTGAAGAAGCACTTCCAACTTACCAAACAACGATTAATAATCTTGATGGTGTTCGCGATGAAACGGGGAATAGCCCTTCTAGTTGGGCTGTTTGGACGAGGGCTTGGACAGCTGAAGAAAACAGGCACGGCGATCTTCTCAATAAGTATCTTTACCTTTCTGGACGAGTTGATATGAGGCAAATTGAGAAGACTATTCAGTATCTGATTGGATCAGGAATGAATCCACAGATGGAAAACAATCCCTACCTCGGATTCATCTACACCTCATTCCAAGAACGGGCAACTTTCATCACACACGGCAACACAGGCAGGCTAGCCAAAGAGCATGGAGACCTAAAACTAGCCCAAATATGCGGCATTATAGCCGAGACGAAACGCCACGAAACTGCGTGA

Network for GWHGAAZE020786

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03405.15	FA_desaturase_2	73	272	2.00E-96

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03921	FAB2, SSI2, desA1	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

GO term	Ontology	Name
GO:0006631	biological_process	fatty acid metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0045300	molecular_function	acyl-[acyl-carrier-protein] desaturase activity
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.607
	SRR3591706	second leaf	0.397
	SRR3591707	mature leaf	0.101
	SRR3591708	Shoot apex	0.563
	SRR3591709	Stem	2.300
	SRR3591710	White floral bud	0.107
	SRR3591711	White flower	0.179
	SRR3591712	Green floral bud	0.313
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.488
	SRR8316896	Juvenile bud stage	0.592
	SRR8316897	Juvenile bud stage	0.164
	SRR8316894	Third green stage	0.234
	SRR8316900	Third green stage	0.142
	SRR8316901	Third green stage	0.374
	SRR8316898	Complete white stage	0.157
	SRR8316899	Complete white stage	0.967
	SRR8316903	Complete white stage	0.201
	SRR8316902	Silver flowering stage	0.133
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.105
	SRR8316906	Gold flowering stage	0.266
	SRR8316907	Gold flowering stage	0.217
	SRR8316908	Gold flowering stage	0.514
SRP132670	SRR6706286	Control	0.665
	SRR6706287	Light intensity 50%	0.793
	SRR6706288	Light intensity 20%	0.742
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.079
	CNS0095593	Slightly white alabastrum(diploid) 2	0.051
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.055
	CNS0095596	Whole white alabastrum(diploid) 3	0.363
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.100
	CNS0095601	Golden flower (diploid) 1	0.170
	CNS0095602	Golden flower (diploid) 2	0.180
	CNS0095603	Golden flower (diploid) 3	0.502
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.006
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.029
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.218
	CRR073298	Stem 2	1.565
	CRR073299	Stem 3	1.617
	CRR073300	Leaf 1	1.041
	CRR073301	Leaf 2	0.308
	CRR073302	Leaf 3	0.716
	CRR073303	Juvenile bud 1	0.217
	CRR073304	Juvenile bud 2	0.127
	CRR073305	Juvenile bud 3	0.989
	CRR073306	Third green 1	0.112
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.132
	CRR073309	Second white 1	0.102
	CRR073310	Second white 2	0.396
	CRR073311	Second white 3	0.358
	CRR073312	Silver flowering 1	0.059
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.125
	CRR073315	Gold flowering 1	1.087
	CRR073316	Gold flowering 2	1.287
	CRR073317	Gold flowering 3	0.750
	CRR073318	Tawny withering 1	2.662
	CRR073319	Tawny withering 2	1.160
	CRR073320	Tawny withering 3	1.785