Detail information of GWHGAAZE020757


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007161984.11.69172E-16hypothetical protein PHAVU_001G114300g [Phaseolus vulgaris]
trEMBLtr|V7CX72|V7CX72_PHAVU6E-17Uncharacterized protein {ECO:0000313|EMBL:ESW33978.1}
TAIR10AT2G43770.13E-12Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene2011800720121440+
GWHAAZE00000006mRNA2011800720121440+
GWHAAZE00000006exon2012107320121440+
GWHAAZE00000006exon2011800720118124+
GWHAAZE00000006CDS2011800720118124+
GWHAAZE00000006CDS2012107320121440+
Transcript Sequence

Network for GWHGAAZE020757

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0040GO:0008097 5S rRNA binding GOslim:molecular_function
map03040 Spliceosome
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity GOslim:molecular_function
CFinderModule0275map03040 Spliceosome


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12857SNRNP40, PRP8BP Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.372
SRR3591711White flower0.531
SRR3591712Green floral bud0.540
SRR3591713Yellow flower0.043
SRP173429 SRR8316895Juvenile bud stage 7.070
SRR8316896Juvenile bud stage 11.513
SRR8316897Juvenile bud stage 1.385
SRR8316894Third green stage 5.137
SRR8316900Third green stage 12.726
SRR8316901Third green stage 11.269
SRR8316898Complete white stage 2.747
SRR8316899Complete white stage 7.648
SRR8316903Complete white stage 6.393
SRR8316902Silver flowering stage2.767
SRR8316904Silver flowering stage2.866
SRR8316905Silver flowering stage1.519
SRR8316906Gold flowering stage 2.786
SRR8316907Gold flowering stage 3.005
SRR8316908Gold flowering stage 1.285
SRP132670SRR6706286Control13.759
SRR6706287Light intensity 50%13.723
SRR6706288Light intensity 20%17.218
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.073
CNS0095593Slightly white alabastrum(diploid) 210.174
CNS0095594Slightly white alabastrum(diploid) 36.761
CNS0095595Whole white alabastrum(diploid) 210.321
CNS0095596Whole white alabastrum(diploid) 37.986
CNS0095597Whole white alabastrum(diploid) 48.817
CNS0095598Silvery flower (diploied) 112.058
CNS0095599Silvery flower (diploied) 25.765
CNS0095600Silvery flower (diploied) 37.970
CNS0095601Golden flower (diploid) 17.450
CNS0095602Golden flower (diploid) 26.362
CNS0095603Golden flower (diploid) 38.183
CNS0095604Slightly white alabastrum(tetraploid) 11.612
CNS0095605Slightly white alabastrum(tetraploid) 20.619
CNS0095606Slightly white alabastrum(tetraploid) 31.233
CNS0095607Whole white alabastrum(tetraploid) 10.331
CNS0095608Whole white alabastrum(tetraploid) 20.744
CNS0095609Whole white alabastrum(tetraploid) 31.247
CNS0095610Silvery flower (tetraploid) 10.780
CNS0095611Silvery flower (tetraploid) 21.369
CNS0095612Silvery flower (tetraploid) 30.655
CNS0095613Golden flower (tetraploid) 10.339
CNS0095614Golden flower (tetraploid) 20.393
CNS0095615Golden flower (tetraploid) 30.577
CRA001975CRR073297Stem 119.234
CRR073298Stem 221.688
CRR073299Stem 37.930
CRR073300Leaf 121.689
CRR073301Leaf 220.511
CRR073302Leaf 35.303
CRR073303Juvenile bud 14.593
CRR073304Juvenile bud 22.879
CRR073305Juvenile bud 35.760
CRR073306Third green 11.115
CRR073307Third green 21.258
CRR073308Third green 32.329
CRR073309Second white 10.059
CRR073310Second white 21.063
CRR073311Second white 32.363
CRR073312Silver flowering 11.025
CRR073313Silver flowering 20.598
CRR073314Silver flowering 31.385
CRR073315Gold flowering 14.373
CRR073316Gold flowering 25.433
CRR073317Gold flowering 30.474
CRR073318Tawny withering 17.089
CRR073319Tawny withering 27.285
CRR073320Tawny withering 37.782