Detail information of GWHGAAZE020714


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABD28518.27.88875E-26Quinonprotein alcohol dehydrogenase-like [Medicago truncatula]
COGYP_007200197.10.000004WD40 repeat-containing protein
trEMBLtr|Q2HVC9|Q2HVC9_MEDTR3E-26Quinonprotein alcohol dehydrogenase-like {ECO:0000313|EMBL:ABD28518.2} (Fragment)
TAIR10AT2G43770.12E-21Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene1881914818819609+
GWHAAZE00000006mRNA1881914818819609+
GWHAAZE00000006exon1881914818819202+
GWHAAZE00000006exon1881936518819609+
GWHAAZE00000006CDS1881914818819202+
GWHAAZE00000006CDS1881936518819609+
Transcript Sequence

Network for GWHGAAZE020714

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12857SNRNP40, PRP8BP Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.509
SRR3591709Stem0.000
SRR3591710White floral bud0.464
SRR3591711White flower0.483
SRR3591712Green floral bud0.010
SRR3591713Yellow flower0.006
SRP173429 SRR8316895Juvenile bud stage 0.239
SRR8316896Juvenile bud stage 0.503
SRR8316897Juvenile bud stage 0.237
SRR8316894Third green stage 0.142
SRR8316900Third green stage 0.794
SRR8316901Third green stage 0.187
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.057
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.096
SRP132670SRR6706286Control0.262
SRR6706287Light intensity 50%0.348
SRR6706288Light intensity 20%0.230
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.194
CNS0095593Slightly white alabastrum(diploid) 20.048
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 22.136
CNS0095596Whole white alabastrum(diploid) 30.495
CNS0095597Whole white alabastrum(diploid) 45.190
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.002
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.011
CNS0095603Golden flower (diploid) 30.001
CNS0095604Slightly white alabastrum(tetraploid) 10.003
CNS0095605Slightly white alabastrum(tetraploid) 20.002
CNS0095606Slightly white alabastrum(tetraploid) 30.002
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.002
CNS0095609Whole white alabastrum(tetraploid) 30.009
CNS0095610Silvery flower (tetraploid) 10.004
CNS0095611Silvery flower (tetraploid) 20.010
CNS0095612Silvery flower (tetraploid) 30.001
CNS0095613Golden flower (tetraploid) 10.008
CNS0095614Golden flower (tetraploid) 20.002
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.211
CRR073298Stem 20.490
CRR073299Stem 30.250
CRR073300Leaf 11.167
CRR073301Leaf 20.048
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.053
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.039
CRR073307Third green 20.016
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.004
CRR073311Second white 30.027
CRR073312Silver flowering 10.136
CRR073313Silver flowering 20.009
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.027
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000