Detail information of GWHGAAZE020710


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI24698.32.33344E-37unnamed protein product [Vitis vinifera]
COGNP_487506.17E-11hypothetical protein alr3466
Swissprottr|Q8H0T9|KTNB1_ARATH0.00000006Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|Q2HVC9|Q2HVC9_MEDTR7E-27Quinonprotein alcohol dehydrogenase-like {ECO:0000313|EMBL:ABD28518.2} (Fragment)
TAIR10AT2G43770.15E-22Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene1853584918536446-
GWHAAZE00000006mRNA1853584918536446-
GWHAAZE00000006exon1853584918536010-
GWHAAZE00000006exon1853629118536446-
GWHAAZE00000006CDS1853629118536446-
GWHAAZE00000006CDS1853584918536010-
Transcript Sequence

Network for GWHGAAZE020710

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD404340.029
PF00400.33WD40681020.11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K12857SNRNP40, PRP8BP Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.309
SRR3591712Green floral bud0.404
SRR3591713Yellow flower0.124
SRP173429 SRR8316895Juvenile bud stage 0.839
SRR8316896Juvenile bud stage 1.034
SRR8316897Juvenile bud stage 0.490
SRR8316894Third green stage 0.352
SRR8316900Third green stage 1.478
SRR8316901Third green stage 1.509
SRR8316898Complete white stage 0.163
SRR8316899Complete white stage 3.460
SRR8316903Complete white stage 2.442
SRR8316902Silver flowering stage1.254
SRR8316904Silver flowering stage2.468
SRR8316905Silver flowering stage1.225
SRR8316906Gold flowering stage 2.661
SRR8316907Gold flowering stage 3.678
SRR8316908Gold flowering stage 1.377
SRP132670SRR6706286Control0.465
SRR6706287Light intensity 50%1.070
SRR6706288Light intensity 20%1.127
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.313
CNS0095593Slightly white alabastrum(diploid) 23.537
CNS0095594Slightly white alabastrum(diploid) 31.646
CNS0095595Whole white alabastrum(diploid) 23.818
CNS0095596Whole white alabastrum(diploid) 32.328
CNS0095597Whole white alabastrum(diploid) 42.439
CNS0095598Silvery flower (diploied) 13.645
CNS0095599Silvery flower (diploied) 23.688
CNS0095600Silvery flower (diploied) 31.834
CNS0095601Golden flower (diploid) 11.006
CNS0095602Golden flower (diploid) 22.021
CNS0095603Golden flower (diploid) 31.541
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 12.087
CRR073298Stem 21.046
CRR073299Stem 30.509
CRR073300Leaf 11.640
CRR073301Leaf 20.870
CRR073302Leaf 30.652
CRR073303Juvenile bud 11.397
CRR073304Juvenile bud 20.406
CRR073305Juvenile bud 30.839
CRR073306Third green 10.797
CRR073307Third green 20.241
CRR073308Third green 31.892
CRR073309Second white 10.457
CRR073310Second white 21.088
CRR073311Second white 30.242
CRR073312Silver flowering 10.408
CRR073313Silver flowering 20.191
CRR073314Silver flowering 31.073
CRR073315Gold flowering 10.428
CRR073316Gold flowering 21.891
CRR073317Gold flowering 30.000
CRR073318Tawny withering 11.534
CRR073319Tawny withering 21.698
CRR073320Tawny withering 30.363