Detail information of GWHGAAZE020697


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABD28518.21.07044E-43Quinonprotein alcohol dehydrogenase-like [Medicago truncatula]
COGYP_007200197.10.00000007WD40 repeat-containing protein
trEMBLtr|Q2HVC9|Q2HVC9_MEDTR4E-44Quinonprotein alcohol dehydrogenase-like {ECO:0000313|EMBL:ABD28518.2} (Fragment)
TAIR10AT2G43770.16E-35Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene1811321918113446-
GWHAAZE00000006mRNA1811321918113446-
GWHAAZE00000006exon1811321918113446-
GWHAAZE00000006CDS1811321918113446-
Transcript Sequence

Network for GWHGAAZE020697

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD4010501.30E-05
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12857SNRNP40, PRP8BP Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.413
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.316
SRR3591709Stem0.447
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.535
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.128
SRR8316896Juvenile bud stage 0.695
SRR8316897Juvenile bud stage 0.075
SRR8316894Third green stage 0.754
SRR8316900Third green stage 0.105
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.152
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.177
SRR8316907Gold flowering stage 0.308
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.000
SRR6706287Light intensity 50%0.252
SRR6706288Light intensity 20%0.030
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.253
CNS0095593Slightly white alabastrum(diploid) 20.064
CNS0095594Slightly white alabastrum(diploid) 30.247
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.064
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.178
CNS0095605Slightly white alabastrum(tetraploid) 20.418
CNS0095606Slightly white alabastrum(tetraploid) 30.180
CNS0095607Whole white alabastrum(tetraploid) 10.207
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.081
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.432
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.251
CRA001975CRR073297Stem 10.174
CRR073298Stem 20.127
CRR073299Stem 30.732
CRR073300Leaf 10.192
CRR073301Leaf 20.110
CRR073302Leaf 30.038
CRR073303Juvenile bud 10.188
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.573
CRR073306Third green 10.395
CRR073307Third green 20.360
CRR073308Third green 30.314
CRR073309Second white 10.079
CRR073310Second white 20.793
CRR073311Second white 30.123
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.429
CRR073314Silver flowering 30.893
CRR073315Gold flowering 10.192
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.211
CRR073318Tawny withering 10.771
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.346