Gene detail

Detail information of GWHGAAZE020683

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277631.1	0	PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Vitis vinifera]
COG	YP_001864889.1	2E-46	hypothetical protein Npun_F1222
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	8E-38	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|F6HB26\|F6HB26_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49395.1}
TAIR10	AT2G43770.1	8E-175	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	17743283	17744305	+
GWHAAZE00000006	mRNA	17743283	17744305	+
GWHAAZE00000006	exon	17743283	17744305	+
GWHAAZE00000006	CDS	17743283	17744305	+

Transcript Sequence
>GWHTAAZE020707 ATGATGCAGAGTGAAAGTGCCCTGTCTGTGACAGGTCCCAGACCGATGGACTTGTCTGTTCCACATAGCGCTCCTCAAGGTCCCGGGCCAAACGGAAAGCAGAGAACTTCAAGTTTGGAGTCACCAATCATGTTACTAACAGGTCACCAAAGCGCCATCTACACCATGAAATTCAACCCCGAAGGAACAATAATCGCATCAGGATCCCACGATAGAGAAATCTTCCTTTGGAACGTACATGGTGAATGCAAGAACTTCATGGTCTTAAAAGGCCACAAGAACGCAATTCTCGATCTCCAATGGACCACTGATGGGACCCAGATAATATCTGCGAGCCCTGACAAGACCTTGAGGGTATGGGACGTCGAAGTAGGTAAACAAATAAAAATAATGGCTGAACACTCCTCTTTTGTCAACTCTTGCTGCCCTTCCCGGCGGGGCCCTCCCCTTGTTGTAAGTGGGTCTGATGACGGCACCGCCAAGCTTTGGGATCTGCGCCAGCGTGGTGCGATCCAGACCTTCCCTGACAAGTACCAAATTATGGCCGTCGGATTCTCCGACGCATCGGATAAAATTTACACGGGTGGGATTGATAACGAGATCAAGGTGTGGGACCTACGTAGGAACGAGGTCACAATGACCCTTCAAGGGCATCAAGAAATGATAACGGGGATGCAGTTGAGCCCAGACGGGTCGTATCTTTTGACCAATGGCATGGATTGTACCCTTCGGATTTGGGACATGCGCCCTTATGCCCCGCAAAACCGATGCGTGAAAATTCTTGAGGGACACCAGCATAACTTTGAGAAGAATTTGTTGAAATGTAGCTGGTCTGCTGATGGAAGTAAGGTTACTGCCGGTAGCTCCGATCGGATGGTGTATATTTGGGATACGACGTCTAGGCGTATACTGTATAAACTCCCGGGGCACACTGGATCGGTTAATGAATGCGTCTTTCATCCCAAGGAACCTATTGTTGGTTCTTGTAGCAGTGATAAACAAATATATCTTGGGGAGCTTTGA

Network for GWHGAAZE020683

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0109	Ubiquitin_DWD family Ubiquitin_DWD family map03040 Spliceosome GO:0005515 protein binding GOslim:molecular_function

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	42	78	2.10E-06
PF00400.33	WD40	84	121	7.00E-06
PF00400.33	WD40	126	164	0.00021
PF00400.33	WD40	212	247	9.00E-07
PF00400.33	WD40	256	297	2.00E-05
PF00400.33	WD40	303	337	0.17

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K12857	SNRNP40, PRP8BP	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.529
	SRR3591706	second leaf	5.649
	SRR3591707	mature leaf	6.775
	SRR3591708	Shoot apex	8.945
	SRR3591709	Stem	7.910
	SRR3591710	White floral bud	5.837
	SRR3591711	White flower	10.346
	SRR3591712	Green floral bud	6.488
	SRR3591713	Yellow flower	6.831
SRP173429	SRR8316895	Juvenile bud stage	3.076
	SRR8316896	Juvenile bud stage	5.660
	SRR8316897	Juvenile bud stage	6.135
	SRR8316894	Third green stage	1.935
	SRR8316900	Third green stage	5.748
	SRR8316901	Third green stage	4.167
	SRR8316898	Complete white stage	1.898
	SRR8316899	Complete white stage	6.832
	SRR8316903	Complete white stage	3.657
	SRR8316902	Silver flowering stage	2.371
	SRR8316904	Silver flowering stage	2.443
	SRR8316905	Silver flowering stage	1.651
	SRR8316906	Gold flowering stage	6.234
	SRR8316907	Gold flowering stage	6.645
	SRR8316908	Gold flowering stage	14.854
SRP132670	SRR6706286	Control	7.632
	SRR6706287	Light intensity 50%	7.647
	SRR6706288	Light intensity 20%	7.565
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.485
	CNS0095593	Slightly white alabastrum(diploid) 2	4.991
	CNS0095594	Slightly white alabastrum(diploid) 3	5.528
	CNS0095595	Whole white alabastrum(diploid) 2	2.779
	CNS0095596	Whole white alabastrum(diploid) 3	4.084
	CNS0095597	Whole white alabastrum(diploid) 4	3.374
	CNS0095598	Silvery flower (diploied) 1	4.828
	CNS0095599	Silvery flower (diploied) 2	3.183
	CNS0095600	Silvery flower (diploied) 3	4.953
	CNS0095601	Golden flower (diploid) 1	3.603
	CNS0095602	Golden flower (diploid) 2	5.305
	CNS0095603	Golden flower (diploid) 3	4.862
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.264
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.751
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.081
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.743
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.432
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.225
	CNS0095610	Silvery flower (tetraploid) 1	21.097
	CNS0095611	Silvery flower (tetraploid) 2	17.379
	CNS0095612	Silvery flower (tetraploid) 3	15.362
	CNS0095613	Golden flower (tetraploid) 1	15.162
	CNS0095614	Golden flower (tetraploid) 2	19.657
	CNS0095615	Golden flower (tetraploid) 3	21.351
CRA001975	CRR073297	Stem 1	8.715
	CRR073298	Stem 2	6.948
	CRR073299	Stem 3	10.366
	CRR073300	Leaf 1	7.076
	CRR073301	Leaf 2	8.068
	CRR073302	Leaf 3	6.568
	CRR073303	Juvenile bud 1	8.960
	CRR073304	Juvenile bud 2	5.938
	CRR073305	Juvenile bud 3	7.713
	CRR073306	Third green 1	7.095
	CRR073307	Third green 2	5.764
	CRR073308	Third green 3	5.016
	CRR073309	Second white 1	8.384
	CRR073310	Second white 2	8.743
	CRR073311	Second white 3	6.561
	CRR073312	Silver flowering 1	9.556
	CRR073313	Silver flowering 2	10.474
	CRR073314	Silver flowering 3	9.563
	CRR073315	Gold flowering 1	5.016
	CRR073316	Gold flowering 2	5.992
	CRR073317	Gold flowering 3	5.163
	CRR073318	Tawny withering 1	7.115
	CRR073319	Tawny withering 2	5.038
	CRR073320	Tawny withering 3	8.526