Gene detail

Detail information of GWHGAAZE020653

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN76587.1	0	hypothetical protein VITISV_020288 [Vitis vinifera]
COG	YP_006426721.1	1E-62	glutaminyl-tRNA synthetase
Swissprot	tr\|P52780\|SYQ_LUPLU	3E-45	Glutamine--tRNA ligase
trEMBL	tr\|A5B9C3\|A5B9C3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN76587.1}
TAIR10	AT5G26710.1	0	Glutamyl/glutaminyl-tRNA synthetase, class Ic

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	15973931	15979064	-
GWHAAZE00000006	mRNA	15973931	15979064	-
GWHAAZE00000006	exon	15978866	15979064	-
GWHAAZE00000006	exon	15977240	15978105	-
GWHAAZE00000006	exon	15977056	15977145	-
GWHAAZE00000006	exon	15975040	15975507	-
GWHAAZE00000006	exon	15973931	15974149	-
GWHAAZE00000006	CDS	15978866	15979064	-
GWHAAZE00000006	CDS	15977240	15978105	-
GWHAAZE00000006	CDS	15977056	15977145	-
GWHAAZE00000006	CDS	15975040	15975507	-
GWHAAZE00000006	CDS	15973931	15974149	-

Transcript Sequence
>GWHTAAZE020677 ATCGATGAATGGCTGGAATATGCTCCTGTTCTTTCATCTGGTCCTGGATTTGAAGGAGCATGTAACTACATTGACGGGTATTTGTTGCACCGTACCTTTTTGGTTGGTAATAATCTGTCAATTGCAGATATTGCAATCTGGGCAGGTCTTGCAGGTAAATATTTCAGACATCACCTTATTAAATGTCTAATATTACTGGAATATGATGCTGTATTGAATGAAGTCACAACAACATTTGTGGGTAAAAAAGGGTTGGGAAATCAATTAGCAACCAAACCAAAAGAAAAGGACCAAAAATCCCTAAACCCTAATGCCAAAAATGCTAATGGTGATGTTGCTGAAAAGGGTAAAGCAGGGAGCCGGTCGACTTTTGAAGTGTTTCTTCCTGAAGCTGAAGATGGAAAAGTGCGTCTAAGATTTGCGCCAGAGCCAAGTGGATATCTTCATATCGGCCATTCAAAAGCAGCACTCTTGAATCAGTATTTTGCGGAAAAGTACACAGGTGAGCTGATTGTGCGTTTTGACGACACAAATCCCGCTAAAGAAAGCAACGAATTTGTGGATAATCTTCTAAAAGATATTGAAACTTTGGGTATAAAGTATGCAGCTGTTAAATATACATCTGATTACTTCCCAAAACTAATGGAATTGGCGGAGAAATTGATTCAGGAGGGTAAGGCATATGTTGACGATACACCACGTGAAAAAATGCAGAAAGAAAGGATGGATGGAATTGAATCAAAGTGTAGGAATAACATTCTGGAGGAAAACATGAAATTATGGAAGGAAATGATTTCTGGATCTGAAAGGGGTTTGATGTGCTGTGTCCGTGGGAAATTGGACATGCAGGACCCGAACAAGTCACTTAGGGATCCAGTGTATTACCGTTGCAATCCAATGCCTCACCACAGGATTGGGACCAAGTATAATGTATACCCGACTTATGATTTTGCTTGTCCATTTGTTGATGCGGAGGAAGGTATTACACATGCACTCCGGTCTAGCGAGTATCATGATCGCAATGCTCAGTATCACAGGATTCAAGAGGATATGGGAGTCCGAAAGGGTGGGATGATGCTCGTTTCCCAACCGCATACAAGGAATTGTGCGTGGGGTCTGCAAATTAAGGCATTGACAGAATTCATTCGTGATCAAAGAGCCTCAAAAAATCTCAATCTAATGGAGTGGGACAAGCTCTGGACCATTAACAAGAAGATAATTGACCGCGAGTGTCCCAGACATACTGCAGTAATTGAGCAACGGCAGGTCTCGTTGACTCTAACCGATGGTCCTGAGGAACCATTTGTACGCATCGTACCAAGACATAAGAAATATGAAGGTGCAGGGGATAAGGCTACTACTTACACGAAGAGTATATGGATAGACAATGCTGATGCCGAAGCGATCTCTGCCAATGAGGAAATAACGTTAATGGATTGGGGAAATGCCATTGTTAAAGAAATCAAGAAAGACCAAGATGGTAATGTTATAGAGTTAATTGGGGTTTTGCATCTTCAAGGATCAGTCAAAACCACAAAGTTGAAACTTACCTGGCTACCCAACACAACTGAGCTAGTTACACTCACGTTGGTGGAGTTTGATTATTTAATCACAAAAAAGAAGCTTGATGAAGATGAGGATTTTGTTGACGTGCTTAACCCATGCACAAAAAAGGAGGTTGCTGCACTCGGGGACTCAAACATGAGGAACCTTAAGCGGAATGAGATATTACAACTCGAGAGAAAAGGCTACTTCAGATGTGATGTCCCTTTTTTGAGGCCCTCAAAGCCTATAGTCTTGTATGCAATTCCAGATGGGAGGCAGCAATCTTTCTTAAAGTAA

Network for GWHGAAZE020653

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00749.22	tRNA-synt_1c	135	355	9.50E-77
PF03950.19	tRNA-synt_1c_C	411	588	1.10E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01885	EARS, gltX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Porphyrin and chlorophyll metabolism	map00860
		Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0043039	biological_process	tRNA aminoacylation
GO:0006412	biological_process	translation
GO:0005737	cellular_component	cytoplasm
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.092
	SRR3591706	second leaf	1.483
	SRR3591707	mature leaf	1.633
	SRR3591708	Shoot apex	2.390
	SRR3591709	Stem	2.646
	SRR3591710	White floral bud	2.109
	SRR3591711	White flower	2.958
	SRR3591712	Green floral bud	2.836
	SRR3591713	Yellow flower	2.248
SRP173429	SRR8316895	Juvenile bud stage	2.794
	SRR8316896	Juvenile bud stage	3.714
	SRR8316897	Juvenile bud stage	0.955
	SRR8316894	Third green stage	2.040
	SRR8316900	Third green stage	3.329
	SRR8316901	Third green stage	2.816
	SRR8316898	Complete white stage	0.909
	SRR8316899	Complete white stage	3.650
	SRR8316903	Complete white stage	2.343
	SRR8316902	Silver flowering stage	1.268
	SRR8316904	Silver flowering stage	1.925
	SRR8316905	Silver flowering stage	0.809
	SRR8316906	Gold flowering stage	2.836
	SRR8316907	Gold flowering stage	2.130
	SRR8316908	Gold flowering stage	1.401
SRP132670	SRR6706286	Control	3.392
	SRR6706287	Light intensity 50%	4.163
	SRR6706288	Light intensity 20%	3.602
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.971
	CNS0095593	Slightly white alabastrum(diploid) 2	2.225
	CNS0095594	Slightly white alabastrum(diploid) 3	1.924
	CNS0095595	Whole white alabastrum(diploid) 2	1.528
	CNS0095596	Whole white alabastrum(diploid) 3	0.994
	CNS0095597	Whole white alabastrum(diploid) 4	1.804
	CNS0095598	Silvery flower (diploied) 1	2.608
	CNS0095599	Silvery flower (diploied) 2	1.753
	CNS0095600	Silvery flower (diploied) 3	2.695
	CNS0095601	Golden flower (diploid) 1	2.416
	CNS0095602	Golden flower (diploid) 2	3.009
	CNS0095603	Golden flower (diploid) 3	3.132
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.087
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.328
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.209
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.547
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.193
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.499
	CNS0095610	Silvery flower (tetraploid) 1	6.101
	CNS0095611	Silvery flower (tetraploid) 2	4.563
	CNS0095612	Silvery flower (tetraploid) 3	2.637
	CNS0095613	Golden flower (tetraploid) 1	2.230
	CNS0095614	Golden flower (tetraploid) 2	3.160
	CNS0095615	Golden flower (tetraploid) 3	2.377
CRA001975	CRR073297	Stem 1	4.608
	CRR073298	Stem 2	3.968
	CRR073299	Stem 3	1.457
	CRR073300	Leaf 1	4.051
	CRR073301	Leaf 2	3.114
	CRR073302	Leaf 3	1.107
	CRR073303	Juvenile bud 1	0.995
	CRR073304	Juvenile bud 2	0.833
	CRR073305	Juvenile bud 3	1.418
	CRR073306	Third green 1	0.130
	CRR073307	Third green 2	0.231
	CRR073308	Third green 3	0.308
	CRR073309	Second white 1	0.093
	CRR073310	Second white 2	1.042
	CRR073311	Second white 3	0.369
	CRR073312	Silver flowering 1	0.088
	CRR073313	Silver flowering 2	0.301
	CRR073314	Silver flowering 3	0.478
	CRR073315	Gold flowering 1	0.767
	CRR073316	Gold flowering 2	1.105
	CRR073317	Gold flowering 3	0.189
	CRR073318	Tawny withering 1	2.035
	CRR073319	Tawny withering 2	2.334
	CRR073320	Tawny withering 3	1.600