Gene detail

Detail information of GWHGAAZE020589

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009774053.1	7.67917E-85	PREDICTED: probable linoleate 9S-lipoxygenase 5 [Nicotiana sylvestris]
Swissprot	tr\|Q43191\|LOX15_SOLTU	7E-81	Probable linoleate 9S-lipoxygenase 5
trEMBL	tr\|M1CAP5\|M1CAP5_SOLTU	9E-86	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT1G55020.1	3E-66	lipoxygenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	11201484	11204999	-
GWHAAZE00000006	mRNA	11201484	11204999	-
GWHAAZE00000006	exon	11201484	11201666	-
GWHAAZE00000006	exon	11201916	11202023	-
GWHAAZE00000006	exon	11202230	11202357	-
GWHAAZE00000006	exon	11202534	11202658	-
GWHAAZE00000006	exon	11203559	11203865	-
GWHAAZE00000006	exon	11204364	11204412	-
GWHAAZE00000006	exon	11204820	11204999	-
GWHAAZE00000006	CDS	11204820	11204999	-
GWHAAZE00000006	CDS	11204364	11204412	-
GWHAAZE00000006	CDS	11203559	11203865	-
GWHAAZE00000006	CDS	11202534	11202658	-
GWHAAZE00000006	CDS	11202230	11202357	-
GWHAAZE00000006	CDS	11201916	11202023	-
GWHAAZE00000006	CDS	11201484	11201666	-

Transcript Sequence
>GWHTAAZE020613 ATGTTCTGGGCAGCAATAAATTCTGGTGATAGAGTTGATAGTGCCCTTAAAGATATGGCAGTTGTGATGAAACAATTGAACAGATCAGAAGAGGTGATCGAGACCATTAAATCTTTTCGCCATTTCTGCCCACTTGAGTCACAAGAATCTCTTGACAACTTGCTACTTGAACTCTACAAGAATGAATTGATCTACGTTACTTGTACATGTTTGATCATACTCGATACCTCATTCTTGGAAGATTGGACTACCACAATTGCCCCTCTAACTACTAGTGACACTGCATACAATGTCACATTTGATTGGGAAACACCAGCACCTATAAAAAAATACAGAGAACAAGAGCTAGTTATGTTGAGAGGAACTGGCACTGGAATGCTAGAGGAATGGGACAGGGTGTACGACTATGCGTATTACAATGATTTAGGAGATCCTGATAAAGGCCCTGAAACTGCACGCCCAGTTCTTGGTGGGTTGTCTGAGTACCCGTATCCTCGCAGGGGAAGAACAGGCCGAGAACCAACAAAAACAGGCAAGTACGGGCTAGATGGCCCTTTGCTTGACAAAATCAAAGAAAACATCCCCTTGGAAATGCTCAAGCAACTTCTTCAAACGGACGGTGAAGGACTCGCCAAATTCCCCATGCCACAATTAATCAAAGGCTTACTTTTGAAATATGTGATTCTAAATGATTTTGGAATTGATGATAAGTCTGCATGGAGGATAGACGAAGAATTTGCAAGGGAAATGTTAGCTGGAGTTAACCATGTCAACATCCAACGTCTCAAGGAGTTTTCTCTAACAAGCAAGCTTGATCCTAAAGTCTATGGAAACCAAAACAGTTCAATAACCAAAAATCACATAGAGAATAAACTTGATGGGCTAACAATAGAAGAGAAAGACGGGACACTGAAACCATTAGTGATTAAACTAAGCTTGCCGAATCCACAAGGGGGTCAATTTGGTGTCGTTAGCAAAGTATTTACAGCAATTGAAAATGGCGTCGAAGGTACCATTTGGCAATTGGCTAAAGCTTATTTTGCAGTGAATGACTCGGGCGTTCATCAGCTCATCAACCAC

Network for GWHGAAZE020589

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00305.20	Lipoxygenase	108	178	8.30E-29
PF00305.20	Lipoxygenase	187	299	1.10E-25
PF00305.20	Lipoxygenase	299	360	1.50E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15718	LOX1_5	Linoleic acid metabolism	map00591

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	2.528
	SRR3591711	White flower	2.434
	SRR3591712	Green floral bud	3.948
	SRR3591713	Yellow flower	1.626
SRP173429	SRR8316895	Juvenile bud stage	0.801
	SRR8316896	Juvenile bud stage	0.828
	SRR8316897	Juvenile bud stage	0.019
	SRR8316894	Third green stage	0.297
	SRR8316900	Third green stage	0.942
	SRR8316901	Third green stage	0.849
	SRR8316898	Complete white stage	0.118
	SRR8316899	Complete white stage	0.716
	SRR8316903	Complete white stage	0.959
	SRR8316902	Silver flowering stage	0.726
	SRR8316904	Silver flowering stage	0.961
	SRR8316905	Silver flowering stage	0.380
	SRR8316906	Gold flowering stage	0.917
	SRR8316907	Gold flowering stage	0.569
	SRR8316908	Gold flowering stage	0.093
SRP132670	SRR6706286	Control	0.928
	SRR6706287	Light intensity 50%	0.692
	SRR6706288	Light intensity 20%	0.432
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.294
	CNS0095593	Slightly white alabastrum(diploid) 2	0.912
	CNS0095594	Slightly white alabastrum(diploid) 3	1.391
	CNS0095595	Whole white alabastrum(diploid) 2	0.887
	CNS0095596	Whole white alabastrum(diploid) 3	0.906
	CNS0095597	Whole white alabastrum(diploid) 4	0.609
	CNS0095598	Silvery flower (diploied) 1	0.733
	CNS0095599	Silvery flower (diploied) 2	0.352
	CNS0095600	Silvery flower (diploied) 3	0.742
	CNS0095601	Golden flower (diploid) 1	0.656
	CNS0095602	Golden flower (diploid) 2	0.586
	CNS0095603	Golden flower (diploid) 3	0.387
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.136
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.267
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.161
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.171
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.223
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.297
	CRR073298	Stem 2	0.381
	CRR073299	Stem 3	0.458
	CRR073300	Leaf 1	0.455
	CRR073301	Leaf 2	0.740
	CRR073302	Leaf 3	0.201
	CRR073303	Juvenile bud 1	0.626
	CRR073304	Juvenile bud 2	0.033
	CRR073305	Juvenile bud 3	0.480
	CRR073306	Third green 1	0.136
	CRR073307	Third green 2	0.131
	CRR073308	Third green 3	0.330
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.156
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.057
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.313
	CRR073319	Tawny withering 2	0.339
	CRR073320	Tawny withering 3	0.224