Gene detail

Detail information of GWHGAAZE020579

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011007407.1	0	PREDICTED: calreticulin-3-like [Populus euphratica]
Swissprot	tr\|O04153\|CALR3_ARATH	1E-169	Calreticulin-3 (Precursor)
trEMBL	tr\|A0A059DAX1\|A0A059DAX1_EUCGR	2E-179	Uncharacterized protein {ECO:0000313\|EMBL:KCW87737.1}
TAIR10	AT1G08450.2	1E-122	calreticulin 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	10693249	10708819	+
GWHAAZE00000006	mRNA	10693249	10708819	+
GWHAAZE00000006	exon	10693249	10693339	+
GWHAAZE00000006	exon	10694543	10694650	+
GWHAAZE00000006	exon	10696681	10696873	+
GWHAAZE00000006	exon	10697390	10697504	+
GWHAAZE00000006	exon	10702904	10702960	+
GWHAAZE00000006	exon	10703055	10703102	+
GWHAAZE00000006	exon	10703257	10703364	+
GWHAAZE00000006	exon	10703957	10704043	+
GWHAAZE00000006	exon	10704130	10704187	+
GWHAAZE00000006	exon	10704614	10704681	+
GWHAAZE00000006	exon	10705211	10705306	+
GWHAAZE00000006	exon	10705399	10705455	+
GWHAAZE00000006	exon	10705647	10705706	+
GWHAAZE00000006	exon	10707563	10707595	+
GWHAAZE00000006	exon	10708410	10708819	+
GWHAAZE00000006	CDS	10693249	10693339	+
GWHAAZE00000006	CDS	10694543	10694650	+
GWHAAZE00000006	CDS	10696681	10696873	+
GWHAAZE00000006	CDS	10697390	10697504	+
GWHAAZE00000006	CDS	10702904	10702960	+
GWHAAZE00000006	CDS	10703055	10703102	+
GWHAAZE00000006	CDS	10703257	10703364	+
GWHAAZE00000006	CDS	10703957	10704043	+
GWHAAZE00000006	CDS	10704130	10704187	+
GWHAAZE00000006	CDS	10704614	10704681	+
GWHAAZE00000006	CDS	10705211	10705306	+
GWHAAZE00000006	CDS	10705399	10705455	+
GWHAAZE00000006	CDS	10705647	10705706	+
GWHAAZE00000006	CDS	10707563	10707595	+
GWHAAZE00000006	CDS	10708410	10708421	+
GWHAAZE00000006	three_prime_UTR	10708422	10708819	+

Transcript Sequence
>GWHTAAZE020603 ATGGAAGAAGCTCTTAAGCTTCTCTTTCTTTTTCTAATTTTCCTTTCCAGATCTGCTTATTCTGAAATTTTCTTTGAAGAGCGTTTCGAAGATGAGTGGAGTAGCCGGTGGGTGTTATCAGATTGGAAGAGAAGCGATGGTAAAGCCGGTACATTTAGGCACACCGCAGGACAATGGTCTGCAGATCCAAATGACAAAGGTATTCAGACATATAATGATGCCAAACATTTCGCCATATCTGCAAAGATACCCGAGATCAGCAACAAGGACAGAACTCTTGTGGTTCAATACTCTATAAAGTTTGAACAGGATATCGAATGCGGTGGTGGTTACATTAAGCTTCATTCTGGCTATGTCAATCAGAAGAAATATGGTGGTGATACTCCCTACAGGCCTGATGCAACATATAGTGTCCTTGTTGATAATCGCGAATTAGATTCTGGAAGCTTGTACACTGACTGGGATATCTTACCTCCTCCAAAAATCAAAGACATCCATGCAAAAAAGCCGGCAGATTGGGATGATAGAGAGTACATTGATGATCCTAATGATGTCAAACCGGAGGGAAGAAACAAAATTCCAACTGAGATACCTGATCCAAAGGCAAAAAAGCAATTGGGTTTGTCTGAAAATGTTGTTGAAAGGTTCGGGTTATTCTCAACCGGGAAATTAATGCATTTCCCATGTTCTGGTACCAATCAAACACCAACAGATGAAAAACCGGCTGACTGGGACGAAGAAGATGATGGGATATGGAGACCACCCAAAGTCCCGAATCCAGCCTACAAAGGACCATGGAGACGCAAGAGAATCAAGAACCCGAACTATAAAGGGAAGTGGAAGATTCCATGGATTGATAATCCAGACTTTGAAGATGACCCTGATCTGTACGTGTTCAAGCCAATAAAATATGTAGGCATTGATGTTTGGCAGGTAAAGGCTGGTTCAGTATTTGACAACATTCTGATTTGTGATGACCCACAATACGCAAAGCAAGTTGTGGAAGAAATATGGGCCCAGAACAGGGAGTTTGAAAAAGAGGTTTTTGAGGAGGCAGAGAAAGTCAGAAGAGCTCGAGAAGAAGAGGAGGCAAAAAGAGCGAAGGAGGAAGGCGAAAAGAGGAAGAAAAATAGGCGCCATAGAAGGCATGATCCCCGTGATTATCTGGATGACTACCATGATGAGCTGTGAGAGGTGTTTAGGCTACTGTGGGTTTCAAATCCTCTAAACAGAGAAATAATCCACTACTAAATTTGTGTTGCTTCTTCATTGAGTGAATACTGCTCCTTCCTGTACAATAGTAGATGTAAACCCTAAAAAATTATATAAATGTGTCTTTGATCTGAAAGGGTTGGTTTGTTTGGACCCCATAAATTTTCTTTTCTGGACATAATCAACATGCTAAATCTTAGGGGCCAAATTGACAAATCCAATCCGATTTTACTGGATTTCATGGATTCAAAAAACCGAATTTATTGGATTGATTTCGGCATTAGGGGTCTTAAAAACGAATCCAAATCGAACCTTCTTTAATTACATGTTTAAGTTTAAAATCACAATTTAGTATTACAGGTGGAGGTTGTTTTATA

Network for GWHGAAZE020579

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00262.19	Calreticulin	25	130	3.50E-16
PF00262.19	Calreticulin	131	207	1.50E-13
PF00262.19	Calreticulin	248	323	1.10E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08057	CALR	Protein processing in endoplasmic reticulum	map04141
		Phagosome	map04145
		Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0005783	cellular_component	endoplasmic reticulum
GO:0005509	molecular_function	calcium ion binding
GO:0005515	molecular_function	protein binding
GO:0051082	molecular_function	unfolded protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	93.022
	SRR3591706	second leaf	75.619
	SRR3591707	mature leaf	76.209
	SRR3591708	Shoot apex	94.268
	SRR3591709	Stem	79.602
	SRR3591710	White floral bud	97.290
	SRR3591711	White flower	79.653
	SRR3591712	Green floral bud	163.319
	SRR3591713	Yellow flower	64.085
SRP173429	SRR8316895	Juvenile bud stage	56.487
	SRR8316896	Juvenile bud stage	82.488
	SRR8316897	Juvenile bud stage	37.795
	SRR8316894	Third green stage	33.400
	SRR8316900	Third green stage	106.424
	SRR8316901	Third green stage	101.845
	SRR8316898	Complete white stage	27.543
	SRR8316899	Complete white stage	169.210
	SRR8316903	Complete white stage	48.979
	SRR8316902	Silver flowering stage	15.629
	SRR8316904	Silver flowering stage	19.352
	SRR8316905	Silver flowering stage	9.391
	SRR8316906	Gold flowering stage	28.401
	SRR8316907	Gold flowering stage	23.484
	SRR8316908	Gold flowering stage	35.733
SRP132670	SRR6706286	Control	88.421
	SRR6706287	Light intensity 50%	78.839
	SRR6706288	Light intensity 20%	81.209
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	88.680
	CNS0095593	Slightly white alabastrum(diploid) 2	96.619
	CNS0095594	Slightly white alabastrum(diploid) 3	88.134
	CNS0095595	Whole white alabastrum(diploid) 2	79.318
	CNS0095596	Whole white alabastrum(diploid) 3	78.636
	CNS0095597	Whole white alabastrum(diploid) 4	72.768
	CNS0095598	Silvery flower (diploied) 1	89.825
	CNS0095599	Silvery flower (diploied) 2	67.582
	CNS0095600	Silvery flower (diploied) 3	55.025
	CNS0095601	Golden flower (diploid) 1	89.980
	CNS0095602	Golden flower (diploid) 2	66.785
	CNS0095603	Golden flower (diploid) 3	67.571
	CNS0095604	Slightly white alabastrum(tetraploid) 1	89.215
	CNS0095605	Slightly white alabastrum(tetraploid) 2	81.318
	CNS0095606	Slightly white alabastrum(tetraploid) 3	157.614
	CNS0095607	Whole white alabastrum(tetraploid) 1	60.466
	CNS0095608	Whole white alabastrum(tetraploid) 2	66.515
	CNS0095609	Whole white alabastrum(tetraploid) 3	114.871
	CNS0095610	Silvery flower (tetraploid) 1	82.097
	CNS0095611	Silvery flower (tetraploid) 2	97.214
	CNS0095612	Silvery flower (tetraploid) 3	48.833
	CNS0095613	Golden flower (tetraploid) 1	37.084
	CNS0095614	Golden flower (tetraploid) 2	61.853
	CNS0095615	Golden flower (tetraploid) 3	10.335
CRA001975	CRR073297	Stem 1	82.594
	CRR073298	Stem 2	96.531
	CRR073299	Stem 3	63.711
	CRR073300	Leaf 1	119.989
	CRR073301	Leaf 2	111.710
	CRR073302	Leaf 3	84.271
	CRR073303	Juvenile bud 1	109.181
	CRR073304	Juvenile bud 2	91.836
	CRR073305	Juvenile bud 3	84.447
	CRR073306	Third green 1	13.747
	CRR073307	Third green 2	13.076
	CRR073308	Third green 3	10.817
	CRR073309	Second white 1	7.837
	CRR073310	Second white 2	6.410
	CRR073311	Second white 3	2.769
	CRR073312	Silver flowering 1	2.238
	CRR073313	Silver flowering 2	3.659
	CRR073314	Silver flowering 3	3.602
	CRR073315	Gold flowering 1	47.676
	CRR073316	Gold flowering 2	68.009
	CRR073317	Gold flowering 3	57.463
	CRR073318	Tawny withering 1	70.512
	CRR073319	Tawny withering 2	89.468
	CRR073320	Tawny withering 3	47.566