Gene detail

Detail information of GWHGAAZE020568

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP30618.1	1.4914E-140	hypothetical protein JCGZ_16183 [Jatropha curcas]
COG	NP_681003.1	2E-83	lysyl-tRNA synthetase
Swissprot	tr\|Q43776\|SYK_SOLLC	4E-39	Lysine--tRNA ligase
trEMBL	tr\|A0A067K6G3\|A0A067K6G3_JATCU	6E-141	Lysine--tRNA ligase {ECO:0000256\|RuleBase:RU003748}
TAIR10	AT3G13490.1	1E-107	Lysyl-tRNA synthetase, class II

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	10497316	10501774	-
GWHAAZE00000006	mRNA	10497316	10501774	-
GWHAAZE00000006	exon	10501670	10501774	-
GWHAAZE00000006	exon	10500736	10500948	-
GWHAAZE00000006	exon	10500534	10500628	-
GWHAAZE00000006	exon	10499405	10499495	-
GWHAAZE00000006	exon	10498465	10498632	-
GWHAAZE00000006	exon	10497316	10497687	-
GWHAAZE00000006	CDS	10501670	10501774	-
GWHAAZE00000006	CDS	10500736	10500948	-
GWHAAZE00000006	CDS	10500534	10500628	-
GWHAAZE00000006	CDS	10499405	10499495	-
GWHAAZE00000006	CDS	10498465	10498632	-
GWHAAZE00000006	CDS	10497595	10497687	-
GWHAAZE00000006	three_prime_UTR	10497316	10497594	-

Transcript Sequence
>GWHTAAZE020592 ATGTATGAAGCATATTCAGACTACCAAAGTATGATGAACATGGCAGAAGAAATTGTTACGCGATGTACTCTTGCAGTTCATGGAAAGCTTAGCGTTGAGTACCAGGGTGTAGAAATATGTTTGGAAAGGCCTTGGAGGAGGGAAACAATGCAAAATCTTGTGAAAGAAGCTACCGGTATTGATTTTGTTGCATTGGGTGATGATGGTGATCTTAAAGCTGCTAAAGAAGTTACTATCAAGACCCTCAATTTCAGTCCTGATAAGCAAGAAGAACATTCAATTCAAACATGCCCATCATTTGGCCATCTGCTTAATGAGGTTTTTGAGATAATGGTAGAACCAAAGCTCATACAGCCTACATTTGTTTTGGACTATCCTATTGAGATTTCTCTTCTGGCTAAGCCACACCGAAGTCATGCAGGCTTGACTGAGAGATTTGAACTATTCATTTGTGGCCGTGAACTTGCCAATGCCTTTTCTGAATTGACCGATCCAGTGGATCAGAGGGGACGCCTAGAAGAACAAGTGAGGCAAGATAATGAAAAGAGAGCAGCAGCAGCTTCTGAAACGGAAAGACACAAAAACAACAATGAAGATGAAGAATATGAGGTGACTCTTGATGAAGACTTTTTAGCAGCTCTTGAATACGGGATGCCTCCGGCTTCCGGAATGGGACTTGGAATAGACAGGCTGGTAATGCTTCTCACAAATTCAGCCAGTATTCGCGATGTTATCGCTTTCCCTGTCCTCAAGGTTCAGCAGTAGCTCTAGTAGTAGTACTGGTACCCCCAACCCCTACTCTGCTTTTACATTTTAGTTCATGTTAGTTTTTGAATTGGTCCATTAGTTCCTCCCTCAACTATGATTCAGATAGATAATTATCGGCAAAAATTTGGTTTTTGTTACTGCTAATGTACGTTTAATTTTGGGAATGATAGGAGGTTGATTATTTTTTTGTACAAACTGGACCAAAAGAAATTTTGTGAATTAAAATTGAAGTCATTGATGTATCTCTTGAGTAATGCATATGGTTGTACTGATAAA

Network for GWHGAAZE020568

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00152.21	tRNA-synt_2	2	250	1.50E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04567	KARS, lysS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.757
	SRR3591706	second leaf	0.054
	SRR3591707	mature leaf	0.130
	SRR3591708	Shoot apex	0.348
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.052
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.563
	SRR8316896	Juvenile bud stage	5.281
	SRR8316897	Juvenile bud stage	0.958
	SRR8316894	Third green stage	1.249
	SRR8316900	Third green stage	1.145
	SRR8316901	Third green stage	1.574
	SRR8316898	Complete white stage	0.151
	SRR8316899	Complete white stage	1.032
	SRR8316903	Complete white stage	0.613
	SRR8316902	Silver flowering stage	0.189
	SRR8316904	Silver flowering stage	0.406
	SRR8316905	Silver flowering stage	0.184
	SRR8316906	Gold flowering stage	0.466
	SRR8316907	Gold flowering stage	0.249
	SRR8316908	Gold flowering stage	0.874
SRP132670	SRR6706286	Control	0.836
	SRR6706287	Light intensity 50%	0.867
	SRR6706288	Light intensity 20%	0.966
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.490
	CNS0095593	Slightly white alabastrum(diploid) 2	1.649
	CNS0095594	Slightly white alabastrum(diploid) 3	3.690
	CNS0095595	Whole white alabastrum(diploid) 2	2.022
	CNS0095596	Whole white alabastrum(diploid) 3	0.947
	CNS0095597	Whole white alabastrum(diploid) 4	1.606
	CNS0095598	Silvery flower (diploied) 1	2.586
	CNS0095599	Silvery flower (diploied) 2	1.961
	CNS0095600	Silvery flower (diploied) 3	0.530
	CNS0095601	Golden flower (diploid) 1	2.000
	CNS0095602	Golden flower (diploid) 2	0.771
	CNS0095603	Golden flower (diploid) 3	1.195
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.622
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.194
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.189
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.154
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.276
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.308
	CNS0095610	Silvery flower (tetraploid) 1	0.190
	CNS0095611	Silvery flower (tetraploid) 2	0.450
	CNS0095612	Silvery flower (tetraploid) 3	0.107
	CNS0095613	Golden flower (tetraploid) 1	0.265
	CNS0095614	Golden flower (tetraploid) 2	0.076
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.687
	CRR073298	Stem 2	3.238
	CRR073299	Stem 3	0.443
	CRR073300	Leaf 1	1.070
	CRR073301	Leaf 2	0.970
	CRR073302	Leaf 3	0.325
	CRR073303	Juvenile bud 1	0.206
	CRR073304	Juvenile bud 2	0.066
	CRR073305	Juvenile bud 3	0.260
	CRR073306	Third green 1	0.023
	CRR073307	Third green 2	0.120
	CRR073308	Third green 3	0.084
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.043
	CRR073311	Second white 3	0.010
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.731
	CRR073316	Gold flowering 2	0.904
	CRR073317	Gold flowering 3	0.546
	CRR073318	Tawny withering 1	0.829
	CRR073319	Tawny withering 2	1.591
	CRR073320	Tawny withering 3	1.385