Gene detail

Detail information of GWHGAAZE020554

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008224803.1	2.39624E-32	PREDICTED: chaperone protein ClpB1-like [Prunus mume]
COG	YP_007801972.1	2E-20	ATPases with chaperone activity, ATP-binding subunit
Swissprot	tr\|Q6F2Y7\|CLPB1_ORYSJ	4E-24	Chaperone protein ClpB1
trEMBL	tr\|A9NQA7\|A9NQA7_PICSI	1E-27	Putative uncharacterized protein {ECO:0000313\|EMBL:ABK22818.1}
TAIR10	AT1G74310.1	1E-18	heat shock protein 101

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	10151315	10156720	+
GWHAAZE00000006	mRNA	10151315	10156720	+
GWHAAZE00000006	exon	10151315	10151671	+
GWHAAZE00000006	exon	10152212	10152412	+
GWHAAZE00000006	exon	10152840	10153169	+
GWHAAZE00000006	exon	10153324	10153378	+
GWHAAZE00000006	exon	10153452	10153897	+
GWHAAZE00000006	exon	10156646	10156720	+
GWHAAZE00000006	CDS	10151315	10151671	+
GWHAAZE00000006	CDS	10152212	10152412	+
GWHAAZE00000006	CDS	10152840	10153169	+
GWHAAZE00000006	CDS	10153324	10153378	+
GWHAAZE00000006	CDS	10153452	10153897	+
GWHAAZE00000006	CDS	10156646	10156720	+

Transcript Sequence
>GWHTAAZE020578 TTCAACAATGAATTGCAACAATCTAGCTTTGGAAGACTTGTCGAGGCTGTCAGGGAAAGGCCATACAGTCTTATCCTGTTTAACAAAATTGAGCTGGCCCACCCATCCGTTTTGTCTATTGTTCATAAAATTGTAACTGATGGTGAACTAATTGACGGGCAAGGGCACACTGCTGTGTTCTCTAATACCATTGTCATCATGACTTCAGAAGTAGGAGCTTATCAGCTGGGTAACTCTTGCACATGCGCTAACCGGAGTTCCGAGCTCATGGAACAGTTTAAGTGCAATCCCCGCAGGTTCTACCAAACACACAAATGTGTCCAAAAGCGCAGAATTAGAAAGCGAGGCATTAAAGAGGCAAGAAGTTTCTTCGATCCTGTTTTGCTAGATTCTCTGGACGACATTCTTGTGCTTGATCAGTATCGTGATTCGAAGGCTATTGCTAGGCTCATGCTGAGGGACAGTGCGAGAATTTTTTTCAAAGGAGATCTTGTTATTTACCCTTCCGATGCTGCGTTATCTGAGGCATTGAAGATTAGTAGCAATATTCCTGTGAGTGTCAAAAACGGAAAGGCAATCAAGAGTTGGATTGATGATAGTGTGGCCCAGGTGCTGTGTAATAATAGATCTGGCATGGAGCACGAGCACCCCACCGTTTACGTTGACAGCCTTGTGGGAACAAACGAAGTGTCATTTCGATTCGAGACAAGTAAACATTTAGTAGAAGAATGGTTTCTCAGTCGTTTTAAAGTCTCTTTAGGTAAATTGAGGGCCATTTATCGAATGGAGAAGGAAATCGTCATGATGCTTCTTACAATGGGAAAATATCACTCCCTCCTCGTGAGTGGCCCCATGGAGCTCAGTGATGTTGAACTTCTTTCTAGGGAGGATGCACTGAGCAGCACAGTGGAAGATAATTATCATATAGGGAAAACAACGGAAGTGAAAGCTGTATTGAGGTCCATTGATGCACCATCGGACCTTCGCAATAGGCCTTTTGGGTCTTATTTGTTGTTGGGTCTTAACACTTCGGGGCAGATTGAACTTCTAAAAGGGCTTGCTGAACATATGAAAACTGCTAATGGGAACACACTGCTAATTATAATTGATATGCAGAACCGTTTATATGTGGGGTTGTTGGTAGAGGCGGTGAAGAAGAATCCTCACAGCGTTATTCTATTTTACCGAGTTGAGTCTGCTGATTGTCATTCTTATAGCACTCTGCTCAAAATTTTGGAGAATGGTATGTTAACTGGAAGTGAGGGAGCAGTTGTTGATTTCCGAAATGCCACTATTCTTTTGACATCAAATCTGGGAAATAGAAGTCTCATTGCAAGACTCTTTTGTCATTCTTATCTGGATGGTGCTAACGAAGGCGATACTGTACAGGTATGTAACGGTGGTCCTGGTGATTATATTGTAAACTGTCTCTCGCAAGCGCTGGAAGGGACTGGAGTTAATTAG

Network for GWHGAAZE020554

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07724.15	AAA_2	24	86	6.40E-06
PF07724.15	AAA_2	332	444	5.40E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03695	clpB	Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.086
	SRR3591706	second leaf	0.772
	SRR3591707	mature leaf	1.013
	SRR3591708	Shoot apex	1.051
	SRR3591709	Stem	0.788
	SRR3591710	White floral bud	1.554
	SRR3591711	White flower	1.511
	SRR3591712	Green floral bud	1.042
	SRR3591713	Yellow flower	0.822
SRP173429	SRR8316895	Juvenile bud stage	0.013
	SRR8316896	Juvenile bud stage	0.292
	SRR8316897	Juvenile bud stage	0.685
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.030
	SRR8316901	Third green stage	0.143
	SRR8316898	Complete white stage	0.029
	SRR8316899	Complete white stage	0.103
	SRR8316903	Complete white stage	0.035
	SRR8316902	Silver flowering stage	0.050
	SRR8316904	Silver flowering stage	0.070
	SRR8316905	Silver flowering stage	0.041
	SRR8316906	Gold flowering stage	0.277
	SRR8316907	Gold flowering stage	0.144
	SRR8316908	Gold flowering stage	0.490
SRP132670	SRR6706286	Control	0.222
	SRR6706287	Light intensity 50%	0.188
	SRR6706288	Light intensity 20%	0.171
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.355
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.086
	CNS0095595	Whole white alabastrum(diploid) 2	0.120
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.023
	CNS0095598	Silvery flower (diploied) 1	0.087
	CNS0095599	Silvery flower (diploied) 2	0.029
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.213
	CNS0095602	Golden flower (diploid) 2	0.115
	CNS0095603	Golden flower (diploid) 3	0.142
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.766
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.881
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.467
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.812
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.448
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.752
	CNS0095610	Silvery flower (tetraploid) 1	1.811
	CNS0095611	Silvery flower (tetraploid) 2	2.483
	CNS0095612	Silvery flower (tetraploid) 3	1.855
	CNS0095613	Golden flower (tetraploid) 1	0.648
	CNS0095614	Golden flower (tetraploid) 2	1.716
	CNS0095615	Golden flower (tetraploid) 3	1.810
CRA001975	CRR073297	Stem 1	0.210
	CRR073298	Stem 2	0.219
	CRR073299	Stem 3	0.239
	CRR073300	Leaf 1	0.405
	CRR073301	Leaf 2	0.284
	CRR073302	Leaf 3	0.339
	CRR073303	Juvenile bud 1	0.159
	CRR073304	Juvenile bud 2	0.043
	CRR073305	Juvenile bud 3	0.031
	CRR073306	Third green 1	0.029
	CRR073307	Third green 2	0.060
	CRR073308	Third green 3	0.083
	CRR073309	Second white 1	0.082
	CRR073310	Second white 2	0.093
	CRR073311	Second white 3	0.052
	CRR073312	Silver flowering 1	0.291
	CRR073313	Silver flowering 2	0.137
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.084
	CRR073316	Gold flowering 2	0.054
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.180
	CRR073320	Tawny withering 3	0.113