Gene detail

Detail information of GWHGAAZE020553

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008224803.1	5.60558E-54	PREDICTED: chaperone protein ClpB1-like [Prunus mume]
COG	YP_001973432.1	8E-43	heat shock chaperone ClpB
Swissprot	tr\|Q6F2Y7\|CLPB1_ORYSJ	2E-47	Chaperone protein ClpB1
trEMBL	tr\|C7FB07\|C7FB07_9ROSI	2E-53	Heat shock protein {ECO:0000313\|EMBL:ACT97165.1}
TAIR10	AT1G74310.1	2E-30	heat shock protein 101

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	10118980	10125734	+
GWHAAZE00000006	mRNA	10118980	10125734	+
GWHAAZE00000006	exon	10118980	10119205	+
GWHAAZE00000006	exon	10119881	10120122	+
GWHAAZE00000006	exon	10120215	10120349	+
GWHAAZE00000006	exon	10120495	10120853	+
GWHAAZE00000006	exon	10120950	10121307	+
GWHAAZE00000006	exon	10121830	10122030	+
GWHAAZE00000006	exon	10122767	10123168	+
GWHAAZE00000006	exon	10123251	10123823	+
GWHAAZE00000006	exon	10125603	10125734	+
GWHAAZE00000006	CDS	10118980	10119205	+
GWHAAZE00000006	CDS	10119881	10120122	+
GWHAAZE00000006	CDS	10120215	10120349	+
GWHAAZE00000006	CDS	10120495	10120853	+
GWHAAZE00000006	CDS	10120950	10121307	+
GWHAAZE00000006	CDS	10121830	10122030	+
GWHAAZE00000006	CDS	10122767	10123168	+
GWHAAZE00000006	CDS	10123251	10123823	+
GWHAAZE00000006	CDS	10125603	10125734	+

Transcript Sequence
>GWHTAAZE020577 ATGGCATGCGAAGCAGTGTATGAATCGCCGACGCCGGTAGGCGTGAAGTTGGTGGTGAGAGAAAGTACGAAAGCTTTCCTCCGGAGGGTGGATACAGTGAAGGAATTGGCGAGGGAGGGGAAGTTGAAGGTGGAGAGAGAGAATGCTCCTCTTCGTATTTCTGATCGTGCTTTCCACTACGCTGTTGTTCTCGCCGATAATCTCTTCCTCCCTACTAACAAAACCGATTGCGAATGGAAAAACAAGGTACTTGAGATTCTGAATGAAGCATGTGCGGTTTTGAGGGACAGAATTGTACAAGAGGACCGTGTTTTGGATGAAGAAGAGTACGTCCTACGTAGGGCTCTTGTTGAATATAATGAACTAGTGAAGCAAAAGGACTGCCATAGCAAGGTGTGGTTACAACGTGTAGAGAGAGATGAAAGAGGCTTGGTGAAGTTCGCGAGCATTTTGAAGAGATGGACGCCGGCAGAGTTGCACGGGGAATTACCCGACTTATCCCAGTTTCTTCAACAATTTGGTGTGCTTAAAGACCAACTTGTAGGAATGGTTCCCAATGCGTGCATGGATGCTCTGATTGTCGGGTATGAGCATGTTGCAGAGGTGGTGAGCCGCTTGACTAATATTCCGATTCCATGGTTCTACACTCCTGCGATGCCTGAGTCGAGGGAAAAAGCAATGCGTAAGTTGCATGAGAGGATAGTTGACCAAGATCACGTTTTGGAAGAAATCTTCCAGACCTTGTTTCACCCTAGCCGTTTTATTGCAAAAATAGCTATGGGTACCTCAAAGCGTCCTAGGGGTTCATTGCTCCTTTTGGGCCCTTCTGGCGTTGGCAAGACGGAAATTGCAAGAGGTATTGCGGAACATCTCCTTTATGATGCGAACCGGTTCATAAGAATTGACATGTCAGAGTATGCAGAGCTGCATGTGGTTCCATCTCCCAGCAGTTCGTCCGAAATGTTCAACAATGAATTGCAACAATCTAGCTTTGGAAGACTCGTCGAGGCTGTCAGGGAAAGGCCATACAGTCTTATCCTGTTTGACAAAATTGAGCTGGCCCATCCATCCGTTTTGGCTATTGTTCATAAAATTGTAACTGATGGTGAACTAATTGATGGGCAAGGGCACACTATTGTGTTCTCTAATACCATTGTCATCATGACTTCAGAAGTAGGAGCTTATCGGCTGGGTAACTCTTGCACATGCGCTAACCGGAGTTCTGAGCTCATGGAACAGTTTAAGTGCAATCCCCGCAGGTTCTACCAAACACACAAATGTGTCCAAAAGCGCAGAATTAGAAAGCGTGCCATTAAGGAGGCAAGAAGTTTCTTCGATCCTGCTTTGCTAGATTCTCTGGACGACATTCTTGTGCTTGATCAGTATCGTGATTCCAAGGCTATTGCTAGGCTCTTGCTGAGGGAAAGTGCGAGAATGTTTTTGAAAGGAGATCTTGTTATTTACCCTTCCGATACTGCGTTATCTGAGGCATTGAAGATTAGTAGCAATATTCCTGTGACTGTCAAAAACGGAAAGGCAATCAAGAGTTGGATTGATGATAGTGTGGCCCAGGTGCTATGTAATAGTAGATCTGGCATGGATTACGAGCACCCCGCCGTTTATGTTGACAGCCTTGTGGCAACAAACGAATTGTCATTTAGATTCGAGACAAGTAAACATTTTGTAGAAGAATGGTTTCTCAGTCGTTTTAAAGTCTCTTTAGGTAAATTGAGGGCCATTTATCGAATGGAGAAGGAAATCGTCATGATGCTTCTTATGATGGGAAAATATCACTCCCTCCTCATGAGTGGCCCCATGGAGCTCAGTGATGTTGAACTTCTTTCTAGGGAGGTTCAAAAGTTTCTAAGACGCTGTTATTTGTCAAAATCTAGTTTGCTTTCGGTCCATCACAAAGTCAATAAGGATGCATCAAGCAGCACAGTGGCAGATAATTATCACATAGGGAGAACAATGGAAGGTGTTAATAATCTTCGAAAAAGATTGCAAGAGAGAGTTATAGGACATAAAAATCCAGCCATTGGTTTTATAGTGAAAGCTGTATTGAGGTCCATTGATGCACCATCGGACCTTCGCAATAGGCCTTTTGGGTCTTATTTGTTGTTGGGTCTTAGCACTTCTGGGCAGATTGAACTTCTAAAAGGGCTTGCTGAACATATGAAAACTGCTGACGGGAACACACTGCTGATTACAATTGATATGCAGAACCCTTTATATGTGGGGTTGTTGGTAGAGGCGGTGAAGAAGAATCCTCACAGCGTTCTTCTATTTTACCGAGTTGAGTCTGCTGATTGTCATTCTTATAGCACTCTGCTTAAAATTTTGGAGAATGGTATGTTAACCAGAAGTGAGGGAGCAGTTGTTGATTTCCGAAATGTCACTATTCTTTTGACATCAGATCTGGGAAATAGAAGTCTCCTTGCAAGACTCTTTGGTCATTCTTATCTGGATGGTGCTAACGAAGGCGATACTCTACAGGAAGAGGGTCGTTTGAGGTCTGAGTTGCTTTATCGGATGGACGAGATTATATTTTTTGATCCTTTCTCGCATGAGCAAAGGGAAATTAGAAGGCTTTCAATGGAGGGTCCTCATCTTAATGGGGATGGGTGA

Network for GWHGAAZE020553

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07724.15	AAA_2	265	453	5.50E-20
PF07724.15	AAA_2	775	848	1.70E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03695	clpB	Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.229
	SRR3591706	second leaf	2.230
	SRR3591707	mature leaf	4.003
	SRR3591708	Shoot apex	9.140
	SRR3591709	Stem	12.472
	SRR3591710	White floral bud	6.991
	SRR3591711	White flower	8.013
	SRR3591712	Green floral bud	7.354
	SRR3591713	Yellow flower	4.382
SRP173429	SRR8316895	Juvenile bud stage	0.240
	SRR8316896	Juvenile bud stage	0.631
	SRR8316897	Juvenile bud stage	6.683
	SRR8316894	Third green stage	0.118
	SRR8316900	Third green stage	0.646
	SRR8316901	Third green stage	0.516
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.040
	SRR8316903	Complete white stage	0.069
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.010
	SRR8316906	Gold flowering stage	0.399
	SRR8316907	Gold flowering stage	0.018
	SRR8316908	Gold flowering stage	5.289
SRP132670	SRR6706286	Control	0.276
	SRR6706287	Light intensity 50%	0.182
	SRR6706288	Light intensity 20%	0.212
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.820
	CNS0095593	Slightly white alabastrum(diploid) 2	0.268
	CNS0095594	Slightly white alabastrum(diploid) 3	0.330
	CNS0095595	Whole white alabastrum(diploid) 2	0.270
	CNS0095596	Whole white alabastrum(diploid) 3	0.504
	CNS0095597	Whole white alabastrum(diploid) 4	0.181
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.026
	CNS0095600	Silvery flower (diploied) 3	0.105
	CNS0095601	Golden flower (diploid) 1	0.030
	CNS0095602	Golden flower (diploid) 2	0.027
	CNS0095603	Golden flower (diploid) 3	0.049
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.726
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.797
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.551
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.673
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.962
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.695
	CNS0095610	Silvery flower (tetraploid) 1	16.347
	CNS0095611	Silvery flower (tetraploid) 2	18.051
	CNS0095612	Silvery flower (tetraploid) 3	14.925
	CNS0095613	Golden flower (tetraploid) 1	5.906
	CNS0095614	Golden flower (tetraploid) 2	13.370
	CNS0095615	Golden flower (tetraploid) 3	12.948
CRA001975	CRR073297	Stem 1	0.280
	CRR073298	Stem 2	0.486
	CRR073299	Stem 3	0.099
	CRR073300	Leaf 1	0.047
	CRR073301	Leaf 2	0.264
	CRR073302	Leaf 3	0.206
	CRR073303	Juvenile bud 1	0.102
	CRR073304	Juvenile bud 2	0.307
	CRR073305	Juvenile bud 3	0.028
	CRR073306	Third green 1	0.033
	CRR073307	Third green 2	0.028
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.129
	CRR073310	Second white 2	0.055
	CRR073311	Second white 3	0.038
	CRR073312	Silver flowering 1	0.084
	CRR073313	Silver flowering 2	0.052
	CRR073314	Silver flowering 3	0.063
	CRR073315	Gold flowering 1	0.016
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.046
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.066
	CRR073320	Tawny withering 3	0.000