Gene detail

Detail information of GWHGAAZE020552

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010924649.1	7.48251E-31	PREDICTED: chaperone protein ClpB1-like [Elaeis guineensis]
COG	YP_003198720.1	6E-28	ATP-dependent chaperone ClpB
Swissprot	tr\|P42730\|CLPB1_ARATH	1E-31	Chaperone protein ClpB1
trEMBL	tr\|K3XEB5\|K3XEB5_SETIT	3E-31	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si000232m}
TAIR10	AT1G74310.1	7E-31	heat shock protein 101

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	10047569	10055509	+
GWHAAZE00000006	mRNA	10047569	10055509	+
GWHAAZE00000006	exon	10047569	10047794	+
GWHAAZE00000006	exon	10048475	10048947	+
GWHAAZE00000006	exon	10049093	10049438	+
GWHAAZE00000006	exon	10049548	10049621	+
GWHAAZE00000006	exon	10050511	10050711	+
GWHAAZE00000006	exon	10051500	10051901	+
GWHAAZE00000006	exon	10051984	10052556	+
GWHAAZE00000006	exon	10053968	10054150	+
GWHAAZE00000006	exon	10055435	10055509	+
GWHAAZE00000006	CDS	10047569	10047794	+
GWHAAZE00000006	CDS	10048475	10048947	+
GWHAAZE00000006	CDS	10049093	10049438	+
GWHAAZE00000006	CDS	10049548	10049621	+
GWHAAZE00000006	CDS	10050511	10050711	+
GWHAAZE00000006	CDS	10051500	10051901	+
GWHAAZE00000006	CDS	10051984	10052556	+
GWHAAZE00000006	CDS	10053968	10054150	+
GWHAAZE00000006	CDS	10055435	10055509	+

Transcript Sequence
>GWHTAAZE020576 ATGGCAAGCGAAGCAGTGTATGAATCGCCGACGCCGGTAGGCGTGAAGAAGGTAGTGAGAGAAAGTACGAAAGCCTTCCTCCGGAGGGTGGATACCGTGAAGGAATTGGTGAGGGAGGGGAAATTGAAGGTGGAGAGAGAGAATGCTCCTCTTCGTATTTCTGATCGTGCTTTCCACTACGCTGTTGTTCTCGCCGATAATCTCTTCCTCCCTACTAACAAAACCGATTGTGAATGGCAAAACAAGATACTTGAGATTCTGAATGAAGCATGTGCGGTTTTGAGGGACAAAATTGTACAGGAGGACAGTGTTTTGGATGAAGAAGAGTACGTCCTACGAAGGGCTCTTGTTGAATATAATGAACTAGTGAAGCAAAAGGACTGCCATAGCAAGGTGTGGTTACAACGTGTAGAGAGAGAGATAGAAGAGGCTTCAGTGAAGTTGCAGAGCATTTTGAACAGATGGACGTTGGTTTCGATGTCTTCGAGGATACTATCCCCTGAAGTTTCCAATAAACTAGAGTCTTTCTCCCGTTTTCTAGTGAATACGCTATCCAGTTCTGAGGCAGAGTTGCACGGGGAATTACCCGATTTATCCCAGTTTCTTCAACAATTTGGTGTGCTTAAAGACCAACTTGTGGGAATGGTTCCCAATGCGTGCATGGATGCTCTGACTGTCGGGTATGAGCATGTTGCAGAGGTGGTGAGCCGCTTGACTAATATTCCGATTCCATGGTTCTACACTCCTGCGATGCCCGAGTCGAGGGTTAAAGCAATGCGTAAGCTGCATGAGAGGATAGTTGACCAAGATCACGTTTTGGAAGAAATCTTCCAGACCTTGTTTCACCCTAGCCGTATTATTGTAAAAATAGCTATGGGTACCTCAAAGCGTCCTAGGGGTTCATTGCTCCTTTTGGGCCCTTCTGGCGTTGGCAAGACGGAAATTGCAAGAGGTATTGTGGAGCATCTCCTCTGTGATGTGAACCGGTTCATAAGAATTGACATGTCAGAGTATGCAGAGCTGCATGTGGTTCTATCTCCCAGCGGTTCAGCAATGAATTGCAACAATCTAGCTTTGGAAGACTTGTCGAGTCGAGGGAAAGGCCATCTGATCTTATCTGCAAGAAGTTTCTTCGATCCTGCTTTGCTAGATTCTCTGGACAACATTCTTGTGCTTGATCAGTATCGTGATTCCAAGGCTATTGCTAGGCTCCTGCTGAGGGACAGTGCGAGAAATTTTTTGAAAGGAGATCTTGTTATTTACCCTTCCGATGCTGCGCTATCTGAGGCATTGAAGATTTGTAGCAATATTCCTGTGACTGTCAAAAACGGAAAGGCAATCAAGAGTTGGATTGATGATAGTGTGGCCCAGGTGCTGTGTAATAGTAGATCTGGCATGGAGCATGAGCACCCCACCGTTTACGTTGACAGCCTTGTGGGAACAAACGAATTGTCATTTAGATTCGAGACAAGTAAACTTTTAGTAGAAGAATGCTTTCTCAGTCGTTGTAAAGTCTCTTTAGGTAAATTGAGGGCCATTTATCGAATGGAGAAGGAAATCGTCATGATGCTTCTTACGATGGGAAAATATCACTCCCTCCTTATGAGTGGCCCCGTGGAGCTCAGTGATGTTGAACTTCTTTCTAGGGAAGTTCAAAAGTTTCTGAGATGCTGTTATTTGTCAAAATCTAGTTTGCTTTCGGTCCATCACAAAGTCAATAAGGATGCATCGAGCAGCACAGTGGCAGATAATTATCACATAGGGAGAATGACGGAAGGTATTAATAATCTCCGAAAAAGATTGCAAGAGAGAGTCATAGGACATAAAAATCCAGCCATTGGTTTTATAGCGAATGCTTTATTGAGGTCCATTGATGGACCATCTGACCTTCGCAATAGGCCTTTTGGGTCTTATTTGTTATTGGGCCTTAACACTTCGGGTCAGATTGAACTTCTAAAAGGACTTGCTGAACATATGAAAACTGCCGATGGGAACACACTGCTGATTACAATTGATATGCAGAACCCTTTATATGTGGGGTTGTTGGTAGAGGCGGTGAAGAAGAATCCTCACAGCGTTCTTCTATTTCACCGAGTTGAGTCTGCTGATTGTCATTCTTATAGCACTCTGCTCAAGATTTTGGAGAATGGTATGTTAGCCGGAAGTGCGGGAGCAGTTGTTGATTTCAGAGATGCCACTATTGTTTTGACATCAGATCTGGGAAATAGAAGTCTCCTTGCAAGACTCTTTGGTCATTCTTATCTGGATGGCACTAACGAAGGCGATACTCTACAGGAAAAGGGTCATTTGAGGTCTGAGTTGCTTTATCGGATGGACGAGATTATATTTTTTGATCCTTTCTCGCTTGAGCAAAGGGAAATTAGAAGGCTTTCAATGGAGGGTCCTCATCTTAATGGCGATGGAGCTGATGAACTGCTATTCTCGCTTTTCAGTATCTTTAGGAAAAGTTCTGACACAGTATGTAACGGTGGTCCTGGTGATTATATTGTAAACTGTCTATCGCAAGCGCTGGAAGGGACTGGAGTTAATTAG

Network for GWHGAAZE020552

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07724.15	AAA_2	297	347	6.60E-06
PF07724.15	AAA_2	638	781	7.40E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03695	clpB	Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.798
	SRR3591706	second leaf	4.990
	SRR3591707	mature leaf	7.840
	SRR3591708	Shoot apex	12.269
	SRR3591709	Stem	12.369
	SRR3591710	White floral bud	16.877
	SRR3591711	White flower	19.723
	SRR3591712	Green floral bud	12.716
	SRR3591713	Yellow flower	13.735
SRP173429	SRR8316895	Juvenile bud stage	2.022
	SRR8316896	Juvenile bud stage	2.972
	SRR8316897	Juvenile bud stage	5.371
	SRR8316894	Third green stage	0.720
	SRR8316900	Third green stage	2.727
	SRR8316901	Third green stage	2.887
	SRR8316898	Complete white stage	0.647
	SRR8316899	Complete white stage	1.948
	SRR8316903	Complete white stage	1.387
	SRR8316902	Silver flowering stage	0.878
	SRR8316904	Silver flowering stage	1.031
	SRR8316905	Silver flowering stage	0.511
	SRR8316906	Gold flowering stage	1.633
	SRR8316907	Gold flowering stage	1.429
	SRR8316908	Gold flowering stage	4.881
SRP132670	SRR6706286	Control	1.394
	SRR6706287	Light intensity 50%	1.419
	SRR6706288	Light intensity 20%	1.143
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.650
	CNS0095593	Slightly white alabastrum(diploid) 2	0.778
	CNS0095594	Slightly white alabastrum(diploid) 3	1.579
	CNS0095595	Whole white alabastrum(diploid) 2	0.978
	CNS0095596	Whole white alabastrum(diploid) 3	1.293
	CNS0095597	Whole white alabastrum(diploid) 4	0.987
	CNS0095598	Silvery flower (diploied) 1	1.203
	CNS0095599	Silvery flower (diploied) 2	1.799
	CNS0095600	Silvery flower (diploied) 3	2.920
	CNS0095601	Golden flower (diploid) 1	1.202
	CNS0095602	Golden flower (diploid) 2	2.262
	CNS0095603	Golden flower (diploid) 3	2.106
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.179
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.041
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.190
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.647
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.459
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.030
	CNS0095610	Silvery flower (tetraploid) 1	21.705
	CNS0095611	Silvery flower (tetraploid) 2	25.204
	CNS0095612	Silvery flower (tetraploid) 3	19.308
	CNS0095613	Golden flower (tetraploid) 1	9.655
	CNS0095614	Golden flower (tetraploid) 2	18.692
	CNS0095615	Golden flower (tetraploid) 3	18.232
CRA001975	CRR073297	Stem 1	2.642
	CRR073298	Stem 2	1.459
	CRR073299	Stem 3	1.602
	CRR073300	Leaf 1	1.764
	CRR073301	Leaf 2	1.751
	CRR073302	Leaf 3	1.827
	CRR073303	Juvenile bud 1	1.482
	CRR073304	Juvenile bud 2	1.530
	CRR073305	Juvenile bud 3	0.946
	CRR073306	Third green 1	0.632
	CRR073307	Third green 2	0.261
	CRR073308	Third green 3	0.472
	CRR073309	Second white 1	0.636
	CRR073310	Second white 2	1.154
	CRR073311	Second white 3	1.711
	CRR073312	Silver flowering 1	1.769
	CRR073313	Silver flowering 2	1.399
	CRR073314	Silver flowering 3	0.886
	CRR073315	Gold flowering 1	0.450
	CRR073316	Gold flowering 2	0.498
	CRR073317	Gold flowering 3	1.236
	CRR073318	Tawny withering 1	0.148
	CRR073319	Tawny withering 2	0.471
	CRR073320	Tawny withering 3	0.279