Gene detail

Detail information of GWHGAAZE020551

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010915873.1	1.3666E-57	PREDICTED: chaperone protein ClpB1 [Elaeis guineensis]
COG	YP_005055436.1	7E-46	ATP-dependent chaperone ClpB
Swissprot	tr\|P42730\|CLPB1_ARATH	4E-51	Chaperone protein ClpB1
trEMBL	tr\|M0SF40\|M0SF40_MUSAM	6E-57	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P16240_001}
TAIR10	AT1G74310.1	3E-49	heat shock protein 101

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	10036300	10044958	+
GWHAAZE00000006	mRNA	10036300	10044958	+
GWHAAZE00000006	exon	10036300	10036503	+
GWHAAZE00000006	exon	10038242	10038640	+
GWHAAZE00000006	exon	10038792	10039150	+
GWHAAZE00000006	exon	10039249	10039606	+
GWHAAZE00000006	exon	10041182	10041382	+
GWHAAZE00000006	exon	10042032	10042436	+
GWHAAZE00000006	exon	10042512	10043078	+
GWHAAZE00000006	exon	10044038	10044220	+
GWHAAZE00000006	exon	10044899	10044958	+
GWHAAZE00000006	CDS	10036300	10036503	+
GWHAAZE00000006	CDS	10038242	10038640	+
GWHAAZE00000006	CDS	10038792	10039150	+
GWHAAZE00000006	CDS	10039249	10039606	+
GWHAAZE00000006	CDS	10041182	10041382	+
GWHAAZE00000006	CDS	10042032	10042436	+
GWHAAZE00000006	CDS	10042512	10043078	+
GWHAAZE00000006	CDS	10044038	10044220	+
GWHAAZE00000006	CDS	10044899	10044958	+

Transcript Sequence
>GWHTAAZE020575 ATGGAATCGGAAGCAGCGTCTCAGTCGCCGGCGGTAAGTGGGAAGGCGGTGGTCAGAGATAGTGCGGAAGCCTTCCTCCGGACGGTGGAAGTGATGAAGGAATCGGTGAGGGAGGGAAAGACGAAAGTGGAGAGAGAGAATGCTCCTCTTCGTATTTCAGAAGAAGCTTTCCACTCCGCTGTTGTCCTCGCCCAAAAAACCTTCGAGGACAGTGTTTTGGATGAAGAAGAGTACGTCCTACGTAGGGCTCTTGTTGAATATAAGGAACTAGTGAAGCAGAAGGACTGCCATAGCAAGGTTTGGTTACAACGTGTAGAGAAAGAGATAGAAGAGGCTTCAGTGAAGTTGCAGAGCATTTTGAAAAGATGGATGTCGGTTCCAATGTCTTCAAAGATACTGTCTCCTCATGTTTCCAATAACCTAGAGGCTTTCTCCCGTTTTCTAGTCAATACGCTATCCAGTTCCGAGGCAGAGTTGCATGGGGAATTACCCGACTTATCCCAGTTTATTCAACAATTTGGTGTGCTGAAAGACCAACTTGTGGGAGTGGTTCCCAGTGTGTACATGGATGCTCTAACTGTTGGGTGTGAGCATGTTGCAGAGGTGGTAAGCCGCTTGACTAATATTCCAATTCCATGGTTCTACACTCCTGTGATGCCTGAGTTGAGGAAGAAAGCAATGCGTAAGTTGCATGAGAGGATAGTTGACCAAGATCACGTATTGGATGAAATCTTTCAGACCTTGTTTCGCCGGAGCAATCTTGTTGTAGATATAGCAGCACGTAAGTCAAAGCGTCCTATGGGTTCATTTCTCTTTTTGGGCCCTTCTGGCGTTGGCAAGACAGAAATTGCAAGAGGTATTGTGGAGCATCTCCTTTGCGATGCAAACCGGTTCATAAGAATTGACATGTCAGAGTATGCAGAGCTGCATGTGGTTTCATCTCCCAGCGGTTCATACCAAATATTCAGCAATGAATTGCAGCAACCTAGCTTTGGAAGACTCGTCGGGGCTGTCAAGGAAAGGCCGTACAGTCTTATCCTCTTTGACAAAATTGAGTTGGCCCACCCGTCTGTTTTGGAGATCCTCGTTAAAATTGTAACTGATGGAGAAATGATCGATGGGCAAGGGAATGCTGTTGTGTTCTCTAATACGACTGTCATCATGACTTCAGAAGTAGGAGCTTATCAGCTCAGTTACTCTTGCACGTGCCCTTACTCGAGTTCCCAGCTCATGGAACAGTTTAAGTGCAATCCTCAGAGGTTCTACCAAGCACACAAATGTGTCCAAAAGTGCATAAGCAAAGCAAAAGCCGTTGAAGAGGCAAGAAGTTTCTTCACTCCTGCTTTGCTAAATTCTCTGGACAATATTCTTGTCCTTGACCATTATCGTGATTCCAAGGCTATTGCTAGGATCCTGTTGAGGGACAGTGGTAGAAAAATTTCGAAAGGAGAGCTTGTTATATACCCTTCTGATACTGCACTATCTGAGGTATTGAAGATCAGTAGCAATACTCCTGGAACTGTCAAGTATGGAAAGGCAATCAAGAGTTGGATTGATGATAACGTGGTCCAGGTGCTAAATAACAGTAGATATGTCTTGGAGCAGGAGCACCCCACTGTTTACGTTGACAGACTTGTGGGAACAAACAAACTGTCATTTAGATCCGAGACAAGTATACATTTAGTAGAAGAATGGTTCCTCAATTGTTTTGAAGTCTCTTTAGGTATATTGAAGGCCATGTATCGAATGGAGAAAGAAATCGTCGTAATGCTTCTTCCAGTGGTAAAATATCACTCCCTCCTCATGAGTGGTCCCATGGAGCTCAGTGATGTCGAACTTCTTTGTAGGGAAGTTCAAAAGCTTCTGAGATGCTGTTATTGGTCAAGATCTAGTTTGCTTTCAGTGCATCACAAACTTAATAAGGTGGATGTATCGAGCAGCATGGTGGCAGATAATTATCACGTAGAGAGAACAACAAAAGGGCTTAATAATGTCCGAAAAAGATTGCAAGATCAAGTTATAGGACATAAAAATCCAGCCATTGGTTTTATAGTGAATGCTGTATTGAGATCCATTGATGCAGCATCAGACCTGCCCAATAGGCCATTTGGGTCTTATTTGTTTTTGGGTCTCAACACTTTGGGGCTGATTGAACTTGTAAAAGGGCTTGCTGAACATTTGAAAACCGCCGATGGGAACACATTGCTTATTACAGTTGATATGCAGAACCCTTTATATATGGGGTCATTGGTAGAGGCAGTGAAGAAGAGCCCTCACATCGTTGTTCTGTTTTGCCAAGTTGAGTCTGCTGATTGTAATTCTTATAGCACTCTACTTAGGATTTTGGAGAATGGTATGTTAACCGGAAGTGAGGGAGCAGTTGATTTCAGAAACGCCACTTTTGTTTTAACATCAGATCTGGGAAATAGACATCTCCTATCTAGACTCTTTGGTCATTATCTGGATGATGCTAAACCAGGAGATACTCTACAGGAAAAGGGGTGTTTGAGATCTGAGTTGCTTTATCGGATAGATGAGATTATGTTTTTTGATCCTTTCTCATATGAGCAAAGGGAAATTAGAAGGCTTTTAATGGAGGGTCCTCATCTTAATGGGGATGGAACTGATGAACTGCTTTTCTCATTCTTCAGTATCTTTAGGAAAAGTTCTGACACAGTGAATAAAACCCCTGGGAGCATCCATATGATCAGAATAATCCATGGAGTTGTCATCTGA

Network for GWHGAAZE020551

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07724.15	AAA_2	265	455	2.10E-21
PF07724.15	AAA_2	703	847	1.30E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03695	clpB	Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.410
	SRR3591706	second leaf	3.735
	SRR3591707	mature leaf	3.830
	SRR3591708	Shoot apex	4.944
	SRR3591709	Stem	7.159
	SRR3591710	White floral bud	4.007
	SRR3591711	White flower	4.278
	SRR3591712	Green floral bud	5.038
	SRR3591713	Yellow flower	4.317
SRP173429	SRR8316895	Juvenile bud stage	1.488
	SRR8316896	Juvenile bud stage	2.210
	SRR8316897	Juvenile bud stage	2.014
	SRR8316894	Third green stage	0.921
	SRR8316900	Third green stage	1.735
	SRR8316901	Third green stage	2.048
	SRR8316898	Complete white stage	0.330
	SRR8316899	Complete white stage	1.705
	SRR8316903	Complete white stage	0.592
	SRR8316902	Silver flowering stage	0.399
	SRR8316904	Silver flowering stage	0.527
	SRR8316905	Silver flowering stage	0.248
	SRR8316906	Gold flowering stage	0.514
	SRR8316907	Gold flowering stage	0.522
	SRR8316908	Gold flowering stage	1.205
SRP132670	SRR6706286	Control	1.375
	SRR6706287	Light intensity 50%	1.000
	SRR6706288	Light intensity 20%	1.495
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.327
	CNS0095593	Slightly white alabastrum(diploid) 2	1.296
	CNS0095594	Slightly white alabastrum(diploid) 3	1.105
	CNS0095595	Whole white alabastrum(diploid) 2	1.096
	CNS0095596	Whole white alabastrum(diploid) 3	0.769
	CNS0095597	Whole white alabastrum(diploid) 4	0.707
	CNS0095598	Silvery flower (diploied) 1	1.233
	CNS0095599	Silvery flower (diploied) 2	0.530
	CNS0095600	Silvery flower (diploied) 3	1.377
	CNS0095601	Golden flower (diploid) 1	1.201
	CNS0095602	Golden flower (diploid) 2	0.889
	CNS0095603	Golden flower (diploid) 3	0.735
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.941
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.867
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.565
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.172
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.355
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.789
	CNS0095610	Silvery flower (tetraploid) 1	2.457
	CNS0095611	Silvery flower (tetraploid) 2	2.970
	CNS0095612	Silvery flower (tetraploid) 3	2.301
	CNS0095613	Golden flower (tetraploid) 1	1.271
	CNS0095614	Golden flower (tetraploid) 2	2.721
	CNS0095615	Golden flower (tetraploid) 3	1.189
CRA001975	CRR073297	Stem 1	2.814
	CRR073298	Stem 2	2.581
	CRR073299	Stem 3	2.189
	CRR073300	Leaf 1	1.906
	CRR073301	Leaf 2	2.070
	CRR073302	Leaf 3	1.539
	CRR073303	Juvenile bud 1	1.384
	CRR073304	Juvenile bud 2	0.805
	CRR073305	Juvenile bud 3	1.919
	CRR073306	Third green 1	0.046
	CRR073307	Third green 2	0.048
	CRR073308	Third green 3	0.191
	CRR073309	Second white 1	0.156
	CRR073310	Second white 2	0.456
	CRR073311	Second white 3	0.402
	CRR073312	Silver flowering 1	0.862
	CRR073313	Silver flowering 2	0.328
	CRR073314	Silver flowering 3	0.055
	CRR073315	Gold flowering 1	1.217
	CRR073316	Gold flowering 2	2.114
	CRR073317	Gold flowering 3	0.723
	CRR073318	Tawny withering 1	1.619
	CRR073319	Tawny withering 2	0.861
	CRR073320	Tawny withering 3	1.838