Gene detail

Detail information of GWHGAAZE020530

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097901.1	1.0699E-145	PREDICTED: DNA polymerase I B, chloroplastic/mitochondrial [Sesamum indicum]
COG	YP_003159616.1	5E-33	DNA polymerase I
Swissprot	tr\|F4I6M1\|POLIA_ARATH	3E-134	DNA polymerase I A, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|F6H1W3\|F6H1W3_VITVI	4E-147	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46227.1}
TAIR10	AT1G50840.1	3E-108	polymerase gamma 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	8297762	8312734	-
GWHAAZE00000006	mRNA	8297762	8312734	-
GWHAAZE00000006	exon	8312357	8312734	-
GWHAAZE00000006	exon	8307098	8307193	-
GWHAAZE00000006	exon	8306301	8306393	-
GWHAAZE00000006	exon	8305677	8305871	-
GWHAAZE00000006	exon	8302093	8302305	-
GWHAAZE00000006	exon	8300887	8300976	-
GWHAAZE00000006	exon	8299320	8299530	-
GWHAAZE00000006	exon	8297762	8297766	-
GWHAAZE00000006	CDS	8312357	8312734	-
GWHAAZE00000006	CDS	8307098	8307193	-
GWHAAZE00000006	CDS	8306301	8306393	-
GWHAAZE00000006	CDS	8305677	8305871	-
GWHAAZE00000006	CDS	8302093	8302305	-
GWHAAZE00000006	CDS	8300887	8300976	-
GWHAAZE00000006	CDS	8299320	8299530	-
GWHAAZE00000006	CDS	8297762	8297766	-

Transcript Sequence
>GWHTAAZE020554 ATGCAACCAAAAGTGAAGGAAAGAAAAGTACTAAAAGATATCAAGAAATTGCACTTCTTTGGTGTCAAAATAAAACCCGAAATCTACACCCTAGATGGTTGGTCCTCGGTTAGAGTAGATGCCTTGAAGATCCTCGCTGGCGACATTTCTAAGGAATTTGATTTTACTGATGATGCTCATCAGTTACCGTTAGATGACGAAGATGAAAATATGCATGCAACAATGACGAATGAACAGTCAGAGACGTTTGCTTATGGCACTGCCTTTGCTGCATTTGGAGGGCATTCCAAGGGAATTGAGGCTTGCAATGGTATTGCTGCTTTAATTGGAGTTCTCTCGATAAATTCATTGTTATCCTACTACATCCACCCGTTGCAGGGCACTCATATATCAGGCAAGAATGGGCGCATTCATTATTATCTAAATATCAACACAGAAGCTGGGCGCTTATCTTCTAGGAAACCGGATTTGCAGAACCAGCCTTCTTTAGAGAAGGACAGATTCAAGATCCGCCAGGCATTTATGGCTGCACCAGAGAACTCTCTCATTGTTGCTGATTATGGGCAGTTGGAACATAGGATTATTGTACATCTTTCAAACTGTCGAAGCATGTTGGATGCCTTCAATGTTGGTGTAGACTTCCATTCAAATACTACAATAAACTTGTATCCACACATTCGTGATGCCATTGAACTAAAACATGTGCTTCTTGAGTGGCATCCACAACCTAGTGAAGACAAGCCTCTGGTTCCTCTTGTAAAGGTTTCTGTAATGGAAGCAAGGAGAACAGTTGCCCGCTGGTACAGTGAAAGAGAGGAAGTTCGGCATTGGCAGTACAATTGCAAACAAGATGTTAGCGTAAATAATAGGGTTCACACATTGCTAGGACGGACCTGCTTGTTCCCTCTGATGCATAATCGTACTGGAGCTCAAAAAGCTAACATCGCACGAGCTGCTATCAGTACCGTCGTACAGGGTAGTGCTGGTGATGTTGCAATGTTTGCCATGTTAGAAATATCAAAGAATGCTTGTTTGAAGGAACTCGGGTGGAGATTGCTTTTACAGGTTTATGATGAAGTGATGTTAGGACCAACGGAGTTGGCTGCAGTTGCAAAGGCCATAGTGTTGGATTGCATGTCAAAACCCTTTGATGGAGAGAATATTCTAGAGTTGGCCTATCTGTTGATGCCGAATGAGCTGAAAACTGGTACTCTGCCAAATGTTTGTTACGTCGCCACACAACTTAGAGTATTGTACATTAGGAACCCTCATAAAGGCTGA

Network for GWHGAAZE020530

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00476.21	DNA_pol_A	108	222	6.50E-20
PF00476.21	DNA_pol_A	250	381	6.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02335	polA	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420
		Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0006261	biological_process	DNA-dependent DNA replication
GO:0003677	molecular_function	DNA binding
GO:0003887	molecular_function	DNA-directed DNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.881
	SRR3591706	second leaf	2.429
	SRR3591707	mature leaf	2.663
	SRR3591708	Shoot apex	4.848
	SRR3591709	Stem	3.912
	SRR3591710	White floral bud	3.147
	SRR3591711	White flower	3.405
	SRR3591712	Green floral bud	3.627
	SRR3591713	Yellow flower	4.286
SRP173429	SRR8316895	Juvenile bud stage	0.854
	SRR8316896	Juvenile bud stage	0.990
	SRR8316897	Juvenile bud stage	3.829
	SRR8316894	Third green stage	0.467
	SRR8316900	Third green stage	0.781
	SRR8316901	Third green stage	0.871
	SRR8316898	Complete white stage	0.153
	SRR8316899	Complete white stage	0.574
	SRR8316903	Complete white stage	0.574
	SRR8316902	Silver flowering stage	0.069
	SRR8316904	Silver flowering stage	0.350
	SRR8316905	Silver flowering stage	0.093
	SRR8316906	Gold flowering stage	0.716
	SRR8316907	Gold flowering stage	0.432
	SRR8316908	Gold flowering stage	2.146
SRP132670	SRR6706286	Control	0.416
	SRR6706287	Light intensity 50%	0.614
	SRR6706288	Light intensity 20%	0.759
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.238
	CNS0095593	Slightly white alabastrum(diploid) 2	0.810
	CNS0095594	Slightly white alabastrum(diploid) 3	2.058
	CNS0095595	Whole white alabastrum(diploid) 2	1.040
	CNS0095596	Whole white alabastrum(diploid) 3	0.462
	CNS0095597	Whole white alabastrum(diploid) 4	1.108
	CNS0095598	Silvery flower (diploied) 1	1.826
	CNS0095599	Silvery flower (diploied) 2	0.574
	CNS0095600	Silvery flower (diploied) 3	0.451
	CNS0095601	Golden flower (diploid) 1	1.506
	CNS0095602	Golden flower (diploid) 2	0.824
	CNS0095603	Golden flower (diploid) 3	0.674
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.194
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.837
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.668
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.280
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.196
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.941
	CNS0095610	Silvery flower (tetraploid) 1	5.325
	CNS0095611	Silvery flower (tetraploid) 2	3.983
	CNS0095612	Silvery flower (tetraploid) 3	3.684
	CNS0095613	Golden flower (tetraploid) 1	5.938
	CNS0095614	Golden flower (tetraploid) 2	5.239
	CNS0095615	Golden flower (tetraploid) 3	4.470
CRA001975	CRR073297	Stem 1	1.225
	CRR073298	Stem 2	0.994
	CRR073299	Stem 3	0.106
	CRR073300	Leaf 1	0.485
	CRR073301	Leaf 2	0.859
	CRR073302	Leaf 3	0.562
	CRR073303	Juvenile bud 1	0.177
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.507
	CRR073306	Third green 1	0.070
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.071
	CRR073316	Gold flowering 2	0.737
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.117
	CRR073319	Tawny withering 2	0.681
	CRR073320	Tawny withering 3	0.037