Gene detail

Detail information of GWHGAAZE020529

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010673011.1	7.477E-159	PREDICTED: DNA polymerase I A, chloroplastic/mitochondrial-like isoform X2 [Beta vulgaris subsp. vulgaris]
Swissprot	tr\|F4I6M1\|POLIA_ARATH	8E-146	DNA polymerase I A, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|F6H1W3\|F6H1W3_VITVI	8E-158	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46227.1}
TAIR10	AT1G50840.1	3E-125	polymerase gamma 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	7904414	7910745	-
GWHAAZE00000006	mRNA	7904414	7910745	-
GWHAAZE00000006	exon	7910710	7910745	-
GWHAAZE00000006	exon	7910449	7910640	-
GWHAAZE00000006	exon	7909599	7910275	-
GWHAAZE00000006	exon	7904414	7904759	-
GWHAAZE00000006	CDS	7910710	7910745	-
GWHAAZE00000006	CDS	7910449	7910640	-
GWHAAZE00000006	CDS	7909599	7910275	-
GWHAAZE00000006	CDS	7904414	7904759	-

Transcript Sequence
>GWHTAAZE020553 ATGAGTTTTCGTGCTTCATGGGTTACTTCCAATTTGGTTAACAAGATAGATTTGAAGCAGGAGACACCTGTTGATCATGGAGAAATTACATGCTTCTGTATTTGCTCAGAATCCCAGGCAAATTTCGGCAATAACAAGTCTTGTATCTGGGTGGATGTGCTTGATGGTGGTGGCAGTAGTCTTTTGGCTGTATTCGCTCCATTTTTTGAAGACCCATCCATCAAAAAGGTTTGGCACAACTATTCCTTTCAAAACCATGTTATAGAGAACTATGGGCTTAATGTTTCTGGTTTTCATGCCGACACAATGCATATGGCTCATTTATGGGATTCTTCGAGACGAAAAAAAGGTAGTTATTCCCTAGAAGCACTTACAAGTGACCCTGTTGTAATGTCTGGTTCAAGGTTGTATGCTGACGAGAAGCTGATTGGTGAAGTATCACTGGAAGCCATCTTTGGGAGGAGAACGGTGAAGAAAGATGGATTTCCTGGAAAAAATATAACTGTTCCTCCTGTCGAAGATCTTCAAAGAGTAGAGCGGAATCTTTGGGTTTCTTTTTCTTCCTTAGGTTCAATAAACATGCTAAATCTCTACGAGAGCTTAAAAACTAATTTATCTTGCATGGGATGGAATTTCAATGGAGTTAAACAGGAAGGTTCAATGTTTGACTTTTACGAGAGATTTTGGCGACCGTATAGTGAAGTTGCAGTGAAGATGGAAAGTGCGGGGATGCTGGTCGATCAAACCTATCTTGCAGAGGTTGAGAAAGTGGCTAAAGCCGAGCAGCAAATTGCTGCTGATAGATTTCGCAACTGGGCATCTAAGTACTGTTCAGATGCCAGGTACATGAATATGAGAAGTGAAGCACAGTTACTCCAGCTTTTTTTTGGTGGCGTTAGGAACAGATCTCTAGAAATTACACTTCACAACTTTGGTGTTAAACTAAAACCCGAAATTCACACCCAATATGGTTGGCCTTCGGTTAGAATAGGTGCCTTGAAGATCCTCGCTGGCAACATTTCTAAGGAATTTGATTTTACTGATGAAGCTCATCAGTTGCCGTTAGATGACGATGATGAAAATATGCATGGAACAATGACGAATGAACGGTCAGAGACATTTCCTTATGGCACTGCCTTTGCTGCATTTGGAGGGAATTCCAAGGGAATTGAGGCTTGCAATGGTATTGCTGCTTTAATTGGAGTTCTCTCGATAAATTCGTTATTATCCGACTACATTCACCCGTTGCAG

Network for GWHGAAZE020529

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02335	polA	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420
		Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.154
	SRR3591706	second leaf	0.424
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	3.932
	SRR3591709	Stem	0.771
	SRR3591710	White floral bud	1.190
	SRR3591711	White flower	0.151
	SRR3591712	Green floral bud	2.140
	SRR3591713	Yellow flower	0.069
SRP173429	SRR8316895	Juvenile bud stage	0.953
	SRR8316896	Juvenile bud stage	1.949
	SRR8316897	Juvenile bud stage	1.085
	SRR8316894	Third green stage	0.604
	SRR8316900	Third green stage	2.134
	SRR8316901	Third green stage	1.369
	SRR8316898	Complete white stage	0.155
	SRR8316899	Complete white stage	1.121
	SRR8316903	Complete white stage	0.295
	SRR8316902	Silver flowering stage	0.048
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.034
	SRR8316906	Gold flowering stage	0.101
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.117
SRP132670	SRR6706286	Control	0.751
	SRR6706287	Light intensity 50%	0.654
	SRR6706288	Light intensity 20%	0.792
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.134
	CNS0095593	Slightly white alabastrum(diploid) 2	1.043
	CNS0095594	Slightly white alabastrum(diploid) 3	0.638
	CNS0095595	Whole white alabastrum(diploid) 2	1.191
	CNS0095596	Whole white alabastrum(diploid) 3	0.465
	CNS0095597	Whole white alabastrum(diploid) 4	0.774
	CNS0095598	Silvery flower (diploied) 1	0.287
	CNS0095599	Silvery flower (diploied) 2	0.563
	CNS0095600	Silvery flower (diploied) 3	0.321
	CNS0095601	Golden flower (diploid) 1	0.606
	CNS0095602	Golden flower (diploid) 2	0.176
	CNS0095603	Golden flower (diploid) 3	0.518
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.841
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.559
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.583
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.061
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.707
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.803
	CNS0095610	Silvery flower (tetraploid) 1	0.252
	CNS0095611	Silvery flower (tetraploid) 2	0.174
	CNS0095612	Silvery flower (tetraploid) 3	0.468
	CNS0095613	Golden flower (tetraploid) 1	0.019
	CNS0095614	Golden flower (tetraploid) 2	0.040
	CNS0095615	Golden flower (tetraploid) 3	0.160
CRA001975	CRR073297	Stem 1	1.767
	CRR073298	Stem 2	2.190
	CRR073299	Stem 3	1.532
	CRR073300	Leaf 1	1.737
	CRR073301	Leaf 2	1.544
	CRR073302	Leaf 3	0.699
	CRR073303	Juvenile bud 1	1.151
	CRR073304	Juvenile bud 2	0.836
	CRR073305	Juvenile bud 3	0.590
	CRR073306	Third green 1	0.071
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.038
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.036
	CRR073311	Second white 3	0.133
	CRR073312	Silver flowering 1	0.068
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.041
	CRR073315	Gold flowering 1	0.211
	CRR073316	Gold flowering 2	0.036
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.163
	CRR073319	Tawny withering 2	0.336
	CRR073320	Tawny withering 3	0.586