Gene detail

Detail information of GWHGAAZE020516

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009797869.1	1.8626E-173	PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Nicotiana sylvestris]
Swissprot	tr\|P42056\|VDAC2_SOLTU	8E-173	Mitochondrial outer membrane protein porin of 36 kDa
trEMBL	tr\|A0A059BGL5\|A0A059BGL5_EUCGR	1E-173	Uncharacterized protein {ECO:0000313\|EMBL:KCW65006.1}
TAIR10	AT3G01280.1	2E-111	voltage dependent anion channel 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	7452053	7455289	-
GWHAAZE00000006	mRNA	7452053	7455289	-
GWHAAZE00000006	exon	7452053	7452359	-
GWHAAZE00000006	exon	7452728	7452936	-
GWHAAZE00000006	exon	7453077	7453163	-
GWHAAZE00000006	exon	7453482	7453592	-
GWHAAZE00000006	exon	7455016	7455083	-
GWHAAZE00000006	exon	7455241	7455289	-
GWHAAZE00000006	CDS	7455241	7455289	-
GWHAAZE00000006	CDS	7455016	7455083	-
GWHAAZE00000006	CDS	7453482	7453592	-
GWHAAZE00000006	CDS	7453077	7453163	-
GWHAAZE00000006	CDS	7452728	7452936	-
GWHAAZE00000006	CDS	7452053	7452359	-

Transcript Sequence
>GWHTAAZE020540 ATGGTGAAAGGTCCAGGTTTCTACTCCGATATCGGCAAGAAAGCTCGAGATCTTCTTTACAGGGACTACCAAAACGACCACAAGTTCACCCTCACTACCTACACTTCTAATGGCATTGCCATTACTTCATCTGGAACTAAGAAAGGTGAATTTATTTTGGCGGATGTGAACGCTCAACTGAAGAACAAAAACATCACAACTGATGTGAAAGTGGACACAAATTCCAATGTCTCTACGACCATTACCGTGGATGAACCTGCTCCAGGAATCAAGACAATTTTCAGCTTTATTGCTCCTGATCAGAGATCAGGCAAGGTGGAACTTCAATACTTGCACGAGTATGCTGGAATTAGCACCAGCATTGGACTGACTGCAAGTCCCATTGTCAACTTCTCAGGTATGGCTGGTAACAACATGGTCGCAATTGGGACTGATCTCTCATTTGACACTGCTACTGGTAACTTTACCAAATGCAATGCTGGAATTAGTCTCTCCACCGCTGATCTCATTGCCTCTATGACGTTGAACGACAAAGGCGACAAACTTACTGCATCCTACTACCACACAGTAAGCCCATTGACCAGTACAGCCGTGGGAGCCGAGTTGAGCCATAGCATAGCGAGCAACGAAAATACACTGACCATTGGAACACAGCATTCACTGGACCCACTAACCACTGTGAAAGCCCGGGTCAACAACTTTGGTAAGGCAAGTGCCCTCATCCAGCATGCATGGCATCCAAAGTCGGTCTTCACAATATCAGGAGAAGTGGACACCAGGGCAATTGAAAAAAGTGCCGAGGTTGGTCTCGCATTGGCTCTCAAGCCCTGA

Network for GWHGAAZE020516

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01459.23	Porin_3	5	262	7.60E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15040	VDAC2	Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Ferroptosis	map04216
		Necroptosis	map04217
		Cellular senescence	map04218
		NOD-like receptor signaling pathway	map04621
		Cholesterol metabolism	map04979

Gene Ontology

GO term	Ontology	Name
GO:0098656	biological_process	anion transmembrane transport
GO:0055085	biological_process	transmembrane transport
GO:0005741	cellular_component	mitochondrial outer membrane
GO:0008308	molecular_function	voltage-gated anion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.347
	SRR3591706	second leaf	6.678
	SRR3591707	mature leaf	4.682
	SRR3591708	Shoot apex	8.965
	SRR3591709	Stem	11.831
	SRR3591710	White floral bud	12.044
	SRR3591711	White flower	8.954
	SRR3591712	Green floral bud	25.022
	SRR3591713	Yellow flower	8.823
SRP173429	SRR8316895	Juvenile bud stage	7.489
	SRR8316896	Juvenile bud stage	19.371
	SRR8316897	Juvenile bud stage	9.809
	SRR8316894	Third green stage	4.991
	SRR8316900	Third green stage	22.455
	SRR8316901	Third green stage	21.004
	SRR8316898	Complete white stage	0.468
	SRR8316899	Complete white stage	1.744
	SRR8316903	Complete white stage	0.649
	SRR8316902	Silver flowering stage	0.587
	SRR8316904	Silver flowering stage	0.569
	SRR8316905	Silver flowering stage	0.337
	SRR8316906	Gold flowering stage	0.463
	SRR8316907	Gold flowering stage	0.127
	SRR8316908	Gold flowering stage	0.335
SRP132670	SRR6706286	Control	8.040
	SRR6706287	Light intensity 50%	8.811
	SRR6706288	Light intensity 20%	7.008
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.404
	CNS0095593	Slightly white alabastrum(diploid) 2	11.055
	CNS0095594	Slightly white alabastrum(diploid) 3	19.751
	CNS0095595	Whole white alabastrum(diploid) 2	21.631
	CNS0095596	Whole white alabastrum(diploid) 3	28.572
	CNS0095597	Whole white alabastrum(diploid) 4	25.071
	CNS0095598	Silvery flower (diploied) 1	1.373
	CNS0095599	Silvery flower (diploied) 2	1.126
	CNS0095600	Silvery flower (diploied) 3	0.899
	CNS0095601	Golden flower (diploid) 1	0.534
	CNS0095602	Golden flower (diploid) 2	0.676
	CNS0095603	Golden flower (diploid) 3	0.632
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.143
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.420
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.826
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.392
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.303
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.005
	CNS0095610	Silvery flower (tetraploid) 1	3.644
	CNS0095611	Silvery flower (tetraploid) 2	3.315
	CNS0095612	Silvery flower (tetraploid) 3	3.374
	CNS0095613	Golden flower (tetraploid) 1	1.621
	CNS0095614	Golden flower (tetraploid) 2	3.146
	CNS0095615	Golden flower (tetraploid) 3	2.703
CRA001975	CRR073297	Stem 1	11.744
	CRR073298	Stem 2	9.479
	CRR073299	Stem 3	6.236
	CRR073300	Leaf 1	18.277
	CRR073301	Leaf 2	18.218
	CRR073302	Leaf 3	10.750
	CRR073303	Juvenile bud 1	15.547
	CRR073304	Juvenile bud 2	16.282
	CRR073305	Juvenile bud 3	2.157
	CRR073306	Third green 1	1.766
	CRR073307	Third green 2	3.850
	CRR073308	Third green 3	2.257
	CRR073309	Second white 1	1.069
	CRR073310	Second white 2	1.652
	CRR073311	Second white 3	1.358
	CRR073312	Silver flowering 1	3.627
	CRR073313	Silver flowering 2	5.969
	CRR073314	Silver flowering 3	2.003
	CRR073315	Gold flowering 1	3.033
	CRR073316	Gold flowering 2	1.381
	CRR073317	Gold flowering 3	1.245
	CRR073318	Tawny withering 1	2.844
	CRR073319	Tawny withering 2	2.605
	CRR073320	Tawny withering 3	1.883