Gene detail

Detail information of GWHGAAZE020505

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010097495.1	0	PTI1-like tyrosine-protein kinase 3 [Morus notabilis]
COG	YP_003523895.1	3E-23	serine/threonine protein kinase
Swissprot	tr\|B9DFG5\|PTI13_ARATH	2E-178	PTI1-like tyrosine-protein kinase 3
trEMBL	tr\|W9RFC2\|W9RFC2_9ROSA	0	PTI1-like tyrosine-protein kinase 3 {ECO:0000313\|EMBL:EXB68686.1}
TAIR10	AT3G59350.3	5E-143	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	7025558	7032981	+
GWHAAZE00000006	mRNA	7025558	7032981	+
GWHAAZE00000006	exon	7025558	7025741	+
GWHAAZE00000006	exon	7029444	7029628	+
GWHAAZE00000006	exon	7029755	7029881	+
GWHAAZE00000006	exon	7030359	7030632	+
GWHAAZE00000006	exon	7032816	7032981	+
GWHAAZE00000006	CDS	7025558	7025741	+
GWHAAZE00000006	CDS	7029444	7029628	+
GWHAAZE00000006	CDS	7029755	7029881	+
GWHAAZE00000006	CDS	7030359	7030632	+
GWHAAZE00000006	CDS	7032816	7032981	+

Transcript Sequence
>GWHTAAZE020529 ATGCAGGCACATGCACCTTCTCCTGGTTACTTTGTACAGCTGGAAAATCAAAGTGCTGAAGACGATCTTTATCTGCGGAAGAAAGCGAGGATGCGGAGGTGGCTGTGCTGTACCTGTCAAGTAGAAGAGTCCTACCCATCGCATGAGAGCGAACTTCTCAAAAGCCCGAGGAACAAAGCAGATGAAGTTCCCGCTATTCCCCTTGATGAACTGAAAGAAAAGACAGAAAATTTTGGATCAAAGGCATTGATTGGTGAAGGATCTTATGGAAGAGTATACTATGCTACCTTAAGTAATGAAAATGCCGTGGCTGTGAAAAAGCTGGACGTATCAACTGAGCCTGAATCAAATGGAGAGTTTTTGGCTCAGGTTTCCATGGTTTCAAGGCTAAAGCATGAAAATCTTGTTGAGTTGCTTGGGTACTGTGTAGAAGGCAATGTTCGTGTGCTAGCCTACGAGTTTGCGACCATGGGATCTCTACATGACATTTTGCATGGTAGGAAGGGAGTGCAGGGGGCACAGCCAGGTCCTGTTCTAGACTGGATGCAGAGGGTAAGAATAGCAGTTGATGCGGCTAGGGGGCTGGAATATTTGCACGAGAAGGTCCAACCTTCTATAATACACAGAGATATCAGGTCAAGCAACGTGCTATTGTTTGAAGACTTTAAGGCCAAGATTGCTGATTTCAACCTTTCAAACCAGGCTCCTGACATGGCTGCTCGCCTCCATTCTACTCGTGTTCTCGGAACTTTTGGTTATCATGCACCAGAGTATGCGATGACGGGACAATTGACACAGAAGAGTGATGTGTATAGCTTTGGTGTAGTTCTACTGGAACTTCTGACTGGTAGGAAACCCGTTGATCATACCATGCCTCGTGGACAGCAGAGTCTTGTCACTTGGGTGAGCGCCTTTCATTTCTGTGCCTCTTTCTAG

Network for GWHGAAZE020505

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	83	291	2.40E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIII

KEGG pathway

KO	Enzyme	pathway	mapID
K13436	PTI1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004713	molecular_function	protein tyrosine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.969
	SRR3591706	second leaf	14.906
	SRR3591707	mature leaf	13.077
	SRR3591708	Shoot apex	20.057
	SRR3591709	Stem	40.230
	SRR3591710	White floral bud	51.488
	SRR3591711	White flower	50.601
	SRR3591712	Green floral bud	45.330
	SRR3591713	Yellow flower	49.454
SRP173429	SRR8316895	Juvenile bud stage	41.947
	SRR8316896	Juvenile bud stage	36.770
	SRR8316897	Juvenile bud stage	30.118
	SRR8316894	Third green stage	10.599
	SRR8316900	Third green stage	32.724
	SRR8316901	Third green stage	32.205
	SRR8316898	Complete white stage	16.468
	SRR8316899	Complete white stage	50.781
	SRR8316903	Complete white stage	28.224
	SRR8316902	Silver flowering stage	27.180
	SRR8316904	Silver flowering stage	31.924
	SRR8316905	Silver flowering stage	17.384
	SRR8316906	Gold flowering stage	58.823
	SRR8316907	Gold flowering stage	56.072
	SRR8316908	Gold flowering stage	76.785
SRP132670	SRR6706286	Control	34.594
	SRR6706287	Light intensity 50%	35.197
	SRR6706288	Light intensity 20%	32.334
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.784
	CNS0095593	Slightly white alabastrum(diploid) 2	20.304
	CNS0095594	Slightly white alabastrum(diploid) 3	21.885
	CNS0095595	Whole white alabastrum(diploid) 2	15.714
	CNS0095596	Whole white alabastrum(diploid) 3	15.957
	CNS0095597	Whole white alabastrum(diploid) 4	15.304
	CNS0095598	Silvery flower (diploied) 1	17.258
	CNS0095599	Silvery flower (diploied) 2	14.710
	CNS0095600	Silvery flower (diploied) 3	33.017
	CNS0095601	Golden flower (diploid) 1	16.174
	CNS0095602	Golden flower (diploid) 2	31.389
	CNS0095603	Golden flower (diploid) 3	32.205
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.813
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.536
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.110
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.419
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.407
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.919
	CNS0095610	Silvery flower (tetraploid) 1	52.302
	CNS0095611	Silvery flower (tetraploid) 2	46.508
	CNS0095612	Silvery flower (tetraploid) 3	46.071
	CNS0095613	Golden flower (tetraploid) 1	37.359
	CNS0095614	Golden flower (tetraploid) 2	39.891
	CNS0095615	Golden flower (tetraploid) 3	52.626
CRA001975	CRR073297	Stem 1	70.589
	CRR073298	Stem 2	43.903
	CRR073299	Stem 3	45.821
	CRR073300	Leaf 1	43.807
	CRR073301	Leaf 2	39.264
	CRR073302	Leaf 3	36.100
	CRR073303	Juvenile bud 1	42.577
	CRR073304	Juvenile bud 2	43.887
	CRR073305	Juvenile bud 3	63.053
	CRR073306	Third green 1	68.263
	CRR073307	Third green 2	71.703
	CRR073308	Third green 3	67.478
	CRR073309	Second white 1	58.726
	CRR073310	Second white 2	55.003
	CRR073311	Second white 3	54.262
	CRR073312	Silver flowering 1	61.562
	CRR073313	Silver flowering 2	53.833
	CRR073314	Silver flowering 3	52.115
	CRR073315	Gold flowering 1	25.061
	CRR073316	Gold flowering 2	39.902
	CRR073317	Gold flowering 3	26.575
	CRR073318	Tawny withering 1	56.331
	CRR073319	Tawny withering 2	45.000
	CRR073320	Tawny withering 3	63.779