Gene detail

Detail information of GWHGAAZE020500

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268942.2	0	PREDICTED: 2-isopropylmalate synthase A-like [Vitis vinifera]
COG	YP_004172963.1	3E-124	2-isopropylmalate synthase
Swissprot	tr\|O04973\|LEU1A_SOLPN	0	2-isopropylmalate synthase A
trEMBL	tr\|K4C627\|K4C627_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g053400.2.1}
TAIR10	AT1G74040.1	6E-145	2-isopropylmalate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	6849904	6855990	-
GWHAAZE00000006	mRNA	6849904	6855990	-
GWHAAZE00000006	exon	6849904	6849951	-
GWHAAZE00000006	exon	6850774	6850848	-
GWHAAZE00000006	exon	6850942	6850975	-
GWHAAZE00000006	exon	6851079	6851216	-
GWHAAZE00000006	exon	6851315	6851415	-
GWHAAZE00000006	exon	6852321	6852407	-
GWHAAZE00000006	exon	6852967	6853047	-
GWHAAZE00000006	exon	6853131	6853214	-
GWHAAZE00000006	exon	6853297	6853345	-
GWHAAZE00000006	exon	6855374	6855990	-
GWHAAZE00000006	CDS	6855374	6855990	-
GWHAAZE00000006	CDS	6853297	6853345	-
GWHAAZE00000006	CDS	6853131	6853214	-
GWHAAZE00000006	CDS	6852967	6853047	-
GWHAAZE00000006	CDS	6852321	6852407	-
GWHAAZE00000006	CDS	6851315	6851415	-
GWHAAZE00000006	CDS	6851079	6851216	-
GWHAAZE00000006	CDS	6850942	6850975	-
GWHAAZE00000006	CDS	6850774	6850848	-
GWHAAZE00000006	CDS	6849904	6849951	-

Transcript Sequence
>GWHTAAZE020524 ATGACGTCTCTGTTATCTCGCCCTTATTTCACCACTGCCCGCGCCAACGACTATCAAATTCGCTCTCTATCCATTTCGAAGCCGAGAATCCTCCGCTACTCCGTGTCCTCCTCTATTCGCTCCCGCCCTGAATACATCCCTCACAGGATCCCGGACCCTCACTACGTGCGCATATTCGACACCACCCTACGCGATGGAGAACAATCACCAGGGGCCACCATGACAGCAAAGGAAAAATTGGAGATTGCGAAGCAAATTGCCAAACTAGGCGTGGACGTGATAGAGGCGGGGTTTCCAGCCTCATCGGCTGCTGACCTGGAGGCTGTGAAAATGATAGCGAGAGAGGTAGGGAATGCACGTGACCTGGAGGATGGGCACGTGCCGGTGATATGTGGGCTGGCGAGGTGTAATGCGAAGGATATTGAGGCTGCATGGGAAGGCGTGAAGGAAGCGAAAAAAGGGAGGATACATACTTTTATAGCGACGAGTGAGATTCACATGAAGTATAAGTTGAAGAAAAGCAAGGAGGAGGTGGTGGAGATAGCGAGGAGAATGGTGGCATATGCGCGGAGTTTGGGTTGCGATGATGTTGAGTTTAGCCCTGAAGATGCCGGAAGATCTGAAAGGGAATTTCTATATGAGATTCTGGGGAAGTTATCAAAGCTGGCCAATACTCCTGGAATTGAAAATGTCATCATTTCAACACACTGCCAGAATGATCTTGGACTTTCTACTGCCAACAGTTTAGCAGGGGCTTGTGCTGGTGCAAGACAAGTAGAAGTAACAATCAATGGCATCGGTGAGAGAGCTGGTAATGCTTCTTTGGAAGAGGTGGAAGAGTACTCAGGGCTACGCGTGCAGCCCCACAAAGCTATAGTTGGAGCTAATGCTTTTGCTCATGAAAGTGGTATACATCAGGATGGAATGCTTAAACATAAAAATACGTACGAGATTATATCTCCTGAAGATATTGGGCTTCATCGCTCGAATGAATCTGGCATTGTCCTTGGAAAACTTAGGATTGATGGGCTGAAAGTAGAAATAGGGAGCATGTGGTGCTTTATGTTAAATATCCAAGAAGCACCATTATTGGTACCTGACATGTACAACTTTGTTGTTGAGATTCTCTCATGTTTTCCAACACGAGATACAAAGATTGGACGCCATGCGTTGACGGCTAAACTTCAGGAGCTTGGTTATGACATTAATGGAATGGAGCTTGACGGTCTTTTTTGGCGCTTTAAAGTTGTAGCCGAAAAGAAAAAGGTAGATTGCAAGGAGATCCTTGAGCTCGTAGCCACAAGTAGTACTTGA

Network for GWHGAAZE020500

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00682.20	HMGL-like	56	221	4.00E-51
PF00682.20	HMGL-like	225	278	1.20E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01649	leuA, IMS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Pyruvate metabolism	map00620
		Valine, leucine and isoleucine biosynthesis	map00290

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0046912	molecular_function	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.941
	SRR3591706	second leaf	11.922
	SRR3591707	mature leaf	20.472
	SRR3591708	Shoot apex	2.044
	SRR3591709	Stem	2.629
	SRR3591710	White floral bud	0.239
	SRR3591711	White flower	0.657
	SRR3591712	Green floral bud	0.068
	SRR3591713	Yellow flower	0.147
SRP173429	SRR8316895	Juvenile bud stage	0.822
	SRR8316896	Juvenile bud stage	1.663
	SRR8316897	Juvenile bud stage	1.682
	SRR8316894	Third green stage	0.801
	SRR8316900	Third green stage	0.805
	SRR8316901	Third green stage	1.288
	SRR8316898	Complete white stage	0.074
	SRR8316899	Complete white stage	1.040
	SRR8316903	Complete white stage	0.318
	SRR8316902	Silver flowering stage	0.121
	SRR8316904	Silver flowering stage	0.265
	SRR8316905	Silver flowering stage	0.044
	SRR8316906	Gold flowering stage	1.577
	SRR8316907	Gold flowering stage	0.287
	SRR8316908	Gold flowering stage	1.287
SRP132670	SRR6706286	Control	1.934
	SRR6706287	Light intensity 50%	1.285
	SRR6706288	Light intensity 20%	1.066
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.671
	CNS0095593	Slightly white alabastrum(diploid) 2	0.801
	CNS0095594	Slightly white alabastrum(diploid) 3	1.255
	CNS0095595	Whole white alabastrum(diploid) 2	0.542
	CNS0095596	Whole white alabastrum(diploid) 3	0.332
	CNS0095597	Whole white alabastrum(diploid) 4	1.017
	CNS0095598	Silvery flower (diploied) 1	1.188
	CNS0095599	Silvery flower (diploied) 2	1.184
	CNS0095600	Silvery flower (diploied) 3	0.321
	CNS0095601	Golden flower (diploid) 1	1.352
	CNS0095602	Golden flower (diploid) 2	0.416
	CNS0095603	Golden flower (diploid) 3	0.327
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.728
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.785
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.956
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.308
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.835
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.918
	CNS0095610	Silvery flower (tetraploid) 1	0.159
	CNS0095611	Silvery flower (tetraploid) 2	0.197
	CNS0095612	Silvery flower (tetraploid) 3	0.209
	CNS0095613	Golden flower (tetraploid) 1	0.321
	CNS0095614	Golden flower (tetraploid) 2	0.220
	CNS0095615	Golden flower (tetraploid) 3	0.044
CRA001975	CRR073297	Stem 1	2.742
	CRR073298	Stem 2	2.893
	CRR073299	Stem 3	1.338
	CRR073300	Leaf 1	0.940
	CRR073301	Leaf 2	0.994
	CRR073302	Leaf 3	0.261
	CRR073303	Juvenile bud 1	0.493
	CRR073304	Juvenile bud 2	0.009
	CRR073305	Juvenile bud 3	0.128
	CRR073306	Third green 1	0.123
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.217
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.081
	CRR073312	Silver flowering 1	0.149
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.077
	CRR073315	Gold flowering 1	3.668
	CRR073316	Gold flowering 2	10.006
	CRR073317	Gold flowering 3	4.388
	CRR073318	Tawny withering 1	1.096
	CRR073319	Tawny withering 2	1.244
	CRR073320	Tawny withering 3	0.099